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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGTTACGGACGAGAATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAGgtgggttcatgtgtgcactgtctgtttgcttttacctgacgttactagaaaaactttattgttcagaactacacttttttgaggagagctggattaatttatttgtttgtgtgtggactttag

Basic information

species Physcomitrella patens
transcript PP1S6_375V6.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S6_375V6.1 (Physcomitrella patens), 5'ss of exon 17
lower sequence: LOC_Os10g37210.1 (Oryza sativa), 5'ss of exon 17
GTATGTTACGGACGAGAATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAGgtgggttcatgtgtgcactgtctgtttgcttttacctgacgttactagaaaaactttattgttcagaactacactt--ttttgaggagagctggattaatttatttgtttgtgtgtggactttag
|||||| || |||||||| | | |   |||  |  | || |||||||||||||||||||||||||||||       ||  | || |||   ||   || | | ||  |  | | | |    ||| ||      ||||  |     | |||| |  | ||| |                              
GTATGTCACCGACGAGAAAGGTGACCAGAAGCTTCACATAAATGCTCAAAATTGTCTTCATTGCAAGgta----tttgcctcca-tgttgattcagttgtccatg--gacatttgcatc-ttttgtttcctgtaactgaatgaaatgttgacggtatctgcag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7287107|gb|AW599594.1|AW599594
EST:     ATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAG                         GCCTGTGACATAAAGGATCCAACACAAAATATTCAGTGGACTGTTCCAGAA
genomic: ATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAGgtgggttcat ... tggactttagGCCTGTGACATAAAGGATCCAACACAAAATATTCAGTGGACTGTTCCAGAA
EST: gi|37822904|gb|BJ580970.1|BJ580970
EST:     ATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAG                         GCCTGTGACATAAAGGATCCAACACAAAATATTCAGTGGACTGTTCCAGAA
genomic: ATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAGgtgggttcat ... tggactttagGCCTGTGACATAAAGGATCCAACACAAAATATTCAGTGGACTGTTCCAGAA
EST: gi|162272490|gb|FC448492.1|FC448492
EST:     ATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAG                         GCCTGTGACATAAAGGATCCAACACAAAATATTCAGTGGACTGTTCCAGAA
genomic: ATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAGgtgggttcat ... tggactttagGCCTGTGACATAAAGGATCCAACACAAAATATTCAGTGGACTGTTCCAGAA
EST: gi|37840081|gb|BJ598089.1|BJ598089
EST:     ATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAG                         GCCTGTGACATAAAGGATCCAACACAAAATATTCAGTGGACTGTTCCAGAA
genomic: ATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAGgtgggttcat ... tggactttagGCCTGTGACATAAAGGATCCAACACAAAATATTCAGTGGACTGTTCCAGAA
EST: gi|162179801|gb|FC356392.1|FC356392
EST:     ATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAG                         GCCTGTGACATAAAGGATCCAACACAAAATATTCAGTGGACTGTTCCAGAA
genomic: ATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAGgtgggttcat ... tggactttagGCCTGTGACATAAAGGATCCAACACAAAATATTCAGTGGACTGTTCCAGAA
EST: gi|7207408|gb|AW561410.1|AW561410
EST:     ATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAG                         GCCTGTGACATAAAGGATCCAACACAAAATATTCAGTGGACTGTTCCAGAA
genomic: ATGATAAAATGAAATTGAATATTAATGCTCAAAATTGTCTTCATTGCAAGgtgggttcat ... tggactttagGCCTGTGACATAAAGGATCCAACACAAAATATTCAGTGGACTGTTCCAGAA