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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAGgtgaggatctgtttcccgacttatgtgtatttttttaagagatcatttgcgtagtgtgggagctaactatccgcgttatggtttggagcatctcaaaatg...

Basic information

species Physcomitrella patens
transcript PP1S68_234V6.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37829592|gb|BJ587604.1|BJ587604
EST:     GTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAG                         GATCGGTAAAGTTAAAGACGGGAAAGGAACCTAAACTCGAGGTTCTTCGAT
genomic: GTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAGgtgaggatct ... ttggttgcagGATCGGTAAAGTTAAAGACGGGAAAGGAACCTAAACTCGAGGTTCTTCGAT
EST: gi|37827814|gb|BJ585826.1|BJ585826
EST:     GTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAG                         GATCGGTAAAGTTAAAGACGGGAAAGGAACCTAAACTCGAGGTTCTTCGAT
genomic: GTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAGgtgaggatct ... ttggttgcagGATCGGTAAAGTTAAAGACGGGAAAGGAACCTAAACTCGAGGTTCTTCGAT
EST: gi|208395924|gb|DC920346.1|DC920346
EST:     GTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAG                         GATCGGTAAAGTTAAAGACGGGAAAGGAACCTAAACTCGAGGTTCTTCGAT
genomic: GTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAGgtgaggatct ... ttggttgcagGATCGGTAAAGTTAAAGACGGGAAAGGAACCTAAACTCGAGGTTCTTCGAT
EST: gi|208389101|gb|DC945677.1|DC945677
EST:     GTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAG                         GATCGGTAAAGTTAAAGACGGGAAAGGAACCTAAACTCGAGGTTCTTCGAT
genomic: GTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAGgtgaggatct ... ttggttgcagGATCGGTAAAGTTAAAGACGGGAAAGGAACCTAAACTCGAGGTTCTTCGAT
EST: gi|67700196|gb|BJ960429.1|BJ960429
EST:     GTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAG                         GATCGGTAAAGTTAAAGACGGGAAAGGAACCTAAACTCGAGGTTCTTCGAT
genomic: GTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAGgtgaggatct ... ttggttgcagGATCGGTAAAGTTAAAGACGGGAAAGGAACCTAAACTCGAGGTTCTTCGAT
EST: gi|208378180|gb|DC918801.1|DC918801
EST:     GTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAG                         GATCGGTAAAGTTAAAGACGGGAAAGGAACCTAAACTCGAGGTTCTTCGAT
genomic: GTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAGgtgaggatct ... ttggttgcagGATCGGTAAAGTTAAAGACGGGAAAGGAACCTAAACTCGAGGTTCTTCGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGGCACTTGGCATCCATTGCTTTAGgtgaggatctgtttcccgacttatgtgtatttttttaagagatcatttgcgtagtgtgggagctaactatccgcgttatggtttggagcatctcaaaatg

- - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - -  AGATCA