1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACGgtatgtgtccacaatgcaactcatggtcttgatattttaaatctaatagtgttattttctgcgaaagggaataccccaatctgaactgagacataaaattgtgtattgcag
species | Physcomitrella patens |
transcript | PP1S58_254V6.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: AGACATGAAGGAAGAATGTGGGAAGTACG GTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCEST: gi|162183240|gb|FC360390.1|FC360390
genomic: AGACATGAAGGAAGAATGTGGGAAGTACGgtatgtgtcc ... tgtattgcagGTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTC
EST: AGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACG GTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCEST: gi|162165760|gb|FC341214.1|FC341214
genomic: AGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACGgtatgtgtcc ... tgtattgcagGTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTC
EST: AGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACG GTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCEST: gi|67696982|gb|BJ957215.1|BJ957215
genomic: AGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACGgtatgtgtcc ... tgtattgcagGTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTC
EST: AGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACG GTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCEST: gi|162184034|gb|FC359404.1|FC359404
genomic: AGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACGgtatgtgtcc ... tgtattgcagGTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTC
EST: AGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACG GTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCEST: gi|162244000|gb|FC422329.1|FC422329
genomic: AGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACGgtatgtgtcc ... tgtattgcagGTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTC
EST: AGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACG GTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCEST: gi|162184033|gb|FC359403.1|FC359403
genomic: AGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACGgtatgtgtcc ... tgtattgcagGTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTC
EST: AGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACG GTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTC
genomic: AGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACGgtatgtgtcc ... tgtattgcagGTAACCTTGTGAAACTCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACGgtatgtgtccacaatgcaactcatggtcttgatattttaaatctaatagtgttattttctgcgaaagggaataccccaatctgaactgagacataaaattgtgtattgcag
- - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA