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TTCCAATGGAGAGGAGGGAGATTATGCCACTCTATGCAAGAGTCCTAAGGCACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatccatagttgctctgttgatttcttatgttcttctaacggtgcttatagtcgaccgtacgcagtcacataatgttttagatatcacaccacct...
species | Physcomitrella patens |
transcript | PP1S47_161V6.2 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTCEST: gi|162174483|gb|FC350762.1|FC350762
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGCTCEST: gi|162150281|gb|FC326366.1|FC326366
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGCTCEST: gi|13250964|gb|BG361867.1|BG361867
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTCEST: gi|162269048|gb|FC445540.1|FC445540
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: CACAGAAATTCTTTTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTTTCAACCGTTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCAATGGAGAGGAGGGAGATTATGCCACTCTATGCAAGAGTCCTAAGGCACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatccatagttgctctgttgatttcttatgttcttctaacggtgcttatagtcgaccgtacgcagtcacataatgttttagatatcacaccacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA