1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGCAAGCAGCGGTGCAGGCTGTCCGGAGCACTTTTCAGAGGTCTTTCATCGAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATTTTTCACAGAAAGGAGgtaagttgattggatttttaaaagagttagcatcgactttctaggccttggcaagggttgattccgaattatcggtgcacgtgaatatcaatcttaaaga...
species | Physcomitrella patens |
transcript | PP1S43_232V6.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATTTTTCACAGAAAGGAG GTGGAAATATCATCCGTGAAGGAACATTTGGTCACATCAGGTGTTGAAACAEST: gi|37841897|gb|BJ599905.1|BJ599905
genomic: GAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATTTTTCACAGAAAGGAGgtaagttgat ... aaagctgcagGTGGAAATATCATCCGTGAAGGAACATTTGGTCACATCAGGTGTTGAAACA
EST: GAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATTTTTCACAGAAAGGAG GTGGAAATATCATCCGTGAAGGAACATTTGGTCACATCAGGTGTTGAAACAEST: gi|162260812|gb|FC438168.1|FC438168
genomic: GAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATTTTTCACAGAAAGGAGgtaagttgat ... aaagctgcagGTGGAAATATCATCCGTGAAGGAACATTTGGTCACATCAGGTGTTGAAACA
EST: GAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATTTTTCACAGAAAGGAG GTGGAAATATCATCCGTGAAGGAACATTTGGTCACATCAGGTGTTGAAACAEST: gi|37850978|gb|BJ608986.1|BJ608986
genomic: GAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATTTTTCACAGAAAGGAGgtaagttgat ... aaagctgcagGTGGAAATATCATCCGTGAAGGAACATTTGGTCACATCAGGTGTTGAAACA
EST: GAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATTTTTCACAGAAAGGAG GTGGAAATATCATCCGTGAAGGAACATTTGGTCACATCAGGTGTTGAAACAEST: gi|162240841|gb|FC417512.1|FC417512
genomic: GAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATTTTTCACAGAAAGGAGgtaagttgat ... aaagctgcagGTGGAAATATCATCCGTGAAGGAACATTTGGTCACATCAGGTGTTGAAACA
EST: GAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATCTTTCACAGAAAGGAG GTGGAAATATCATCCGTGAAGGAACATTTGGTCACATCAGGTGTTGAAACAEST: gi|162227119|gb|FC402593.1|FC402593
genomic: GAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATTTTTCACAGAAAGGAGgtaagttgat ... aaagctgcagGTGGAAATATCATCCGTGAAGGAACATTTGGTCACATCAGGTGTTGAAACA
EST: GAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATCTTTCACAGAAAGGAG GTGGAAATATCATCCGTGAAGGAACATTTGGTCACATCAGGTGTTGAAACA
genomic: GAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATTTTTCACAGAAAGGAGgtaagttgat ... aaagctgcagGTGGAAATATCATCCGTGAAGGAACATTTGGTCACATCAGGTGTTGAAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAAGCAGCGGTGCAGGCTGTCCGGAGCACTTTTCAGAGGTCTTTCATCGAACTAGAGCTTCAGCTGCGTTGGCTGCTGGGATTTTTCACAGAAAGGAGgtaagttgattggatttttaaaagagttagcatcgactttctaggccttggcaagggttgattccgaattatcggtgcacgtgaatatcaatcttaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG