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TGAGACTGAAGAGAAGGCCATGGAGGCACTTCGAAAGAACGAGCATATCTTGAGAAGATTGAGTGAGGAATTGCTCGCGAAAACCAAGCTCAGCGGCTTTgtaagtccccacattggatgcttcgattttttcaatttatttcaagtattctactatgtaaattgatctcaatctgctttcctctgaaacctcgagcagc...
species | Physcomitrella patens |
transcript | PP1S42_171V6.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: TGAGAAGATTGAGTGAGGAATTGCTCGCGAAAACCAAGCTCAGCGGCTTT GAAGCGGAAGACATTATTCGATCAATGGATCCGATTATGATGGATGACCCCEST: gi|18339675|gb|BJ171702.1|BJ171702
genomic: TGAGAAGATTGAGTGAGGAATTGCTCGCGAAAACCAAGCTCAGCGGCTTTgtaagtcccc ... atttgtacagGAAGCGGAAGACATTATTCGATCAATGGATCCGATTATGATGGATGACCCC
EST: TGAGAAGATTGAGTGAGGAATTGCTCGCGAAAACCAAGCTCAGCGGCTTT GAAGCGGAAGACATTATTCGATCAATGGATCCGATTATGATGGATGACCCCEST: gi|162254711|gb|FC431000.1|FC431000
genomic: TGAGAAGATTGAGTGAGGAATTGCTCGCGAAAACCAAGCTCAGCGGCTTTgtaagtcccc ... atttgtacagGAAGCGGAAGACATTATTCGATCAATGGATCCGATTATGATGGATGACCCC
EST: TGAGAAGATTGAGTGAGGAATTGCTCGCGAAAACCAAGCTCAGCGGCTTT GAAGCGGAAGACATTATTCGATCAATGGATCCGATTATGATGGATGACCCCEST: gi|162258063|gb|FC434157.1|FC434157
genomic: TGAGAAGATTGAGTGAGGAATTGCTCGCGAAAACCAAGCTCAGCGGCTTTgtaagtcccc ... atttgtacagGAAGCGGAAGACATTATTCGATCAATGGATCCGATTATGATGGATGACCCC
EST: TGAGAAGATTGAGTGAGGAATTGCTCGCGAAAACCAAGCTCAGCGGCTTT GAAGCGGAAGACATTATTCGATCAATGGATCCGATTATGATGGATGACCCCEST: gi|162151237|gb|FC327704.1|FC327704
genomic: TGAGAAGATTGAGTGAGGAATTGCTCGCGAAAACCAAGCTCAGCGGCTTTgtaagtcccc ... atttgtacagGAAGCGGAAGACATTATTCGATCAATGGATCCGATTATGATGGATGACCCC
EST: TGAGAAGATTGAGTGAGGAATTGCTCGCGAAAACCAAGCTCAGCGGCTTT GAAGCGGAAGACATTATTCGATCAATGGATCCGATTATGATGGATGACCCC
genomic: TGAGAAGATTGAGTGAGGAATTGCTCGCGAAAACCAAGCTCAGCGGCTTTgtaagtcccc ... atttgtacagGAAGCGGAAGACATTATTCGATCAATGGATCCGATTATGATGGATGACCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGACTGAAGAGAAGGCCATGGAGGCACTTCGAAAGAACGAGCATATCTTGAGAAGATTGAGTGAGGAATTGCTCGCGAAAACCAAGCTCAGCGGCTTTgtaagtccccacattggatgcttcgattttttcaatttatttcaagtattctactatgtaaattgatctcaatctgctttcctctgaaacctcgagcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA