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ACATGATTTGGGACAACATGATCCATGGGCGGAGGTCAATGCTTACAACATACATGATACAAGCAGATGGAAGGATCTGAACGCTAAGTTTGTTTTGCAGgttagtacacttgcttgagctgtttcttcttaagtttttaatgacactcattttagatttgatctttaatgaatctcactgagaatgtgcctttgagtttgataattcaattagacacagggatcaagagctatttaactatcatgaacctgaaagaccattttacgtatcgctttttctctgcacacag
species | Physcomitrella patens |
transcript | PP1S40_202V6.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: TACATGATACAAGCAGATGGAAGGATCTGAACGCTAAGTTTGTTTTGCAG GTATATAGAGACGTAGTTGCAACTGGCGACAAAGTTTTTGCTAAAGCAGTCEST: gi|100445005|gb|BY964305.1|BY964305
genomic: TACATGATACAAGCAGATGGAAGGATCTGAACGCTAAGTTTGTTTTGCAGgttagtacac ... ctgcacacagGTATATAGAGACGTAGTTGCAACTGGCGACAAAGTTTTTGCTAAAGCAGTC
EST: TACATGATACAAGCAGATGGAAGGATCTGAACGCTAAGTTTGTTTTGCAG GTATATAGAGACGTAGTTGCAACTGGCGACAAAGTTTTTGCTAAAGCAGTCEST: gi|162158463|gb|FC334258.1|FC334258
genomic: TACATGATACAAGCAGATGGAAGGATCTGAACGCTAAGTTTGTTTTGCAGgttagtacac ... ctgcacacagGTATATAGAGACGTAGTTGCAACTGGCGACAAAGTTTTTGCTAAAGCAGTC
EST: GCAGATGGAAGGATCTGAACGCTAAGTTTGTTTTGCAG GTATATAGAGACGTAGTTGCAACTGGCGACAAAGTTTTTGCTAAAGCAGTCEST: gi|162196304|gb|FC373528.1|FC373528
genomic: GCAGATGGAAGGATCTGAACGCTAAGTTTGTTTTGCAGgttagtacac ... ctgcacacagGTATATAGAGACGTAGTTGCAACTGGCGACAAAGTTTTTGCTAAAGCAGTC
EST: TACATGATACAAGCAGATGGAAGGATCTGAACGCTAAGTTTGTTTTGCAG GTATATAGAGACGTAGTTGCAACTGGCGACAAAGTTTTTGCTAAAGCAGTC
genomic: TACATGATACAAGCAGATGGAAGGATCTGAACGCTAAGTTTGTTTTGCAGgttagtacac ... ctgcacacagGTATATAGAGACGTAGTTGCAACTGGCGACAAAGTTTTTGCTAAAGCAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATGATTTGGGACAACATGATCCATGGGCGGAGGTCAATGCTTACAACATACATGATACAAGCAGATGGAAGGATCTGAACGCTAAGTTTGTTTTGCAGgttagtacacttgcttgagctgtttcttcttaagtttttaatgacactcattttagatttgatctttaatgaatctcactgagaatgtgcctttgagtttgataattcaattagacacagggatcaagagctatttaactatcatgaacctgaaagaccattttacgtatcgctttttctctgcacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG