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GGAGTCGGAACGTGTTGATGAATACAGTCTTGGTGCGAGGGAGAATTTGCAAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgtattggattgaactaagtgcatctctatgcttgtgtgtttcgttctgagcgatgtgtgtttcatgttgtacaagcggcacttgcactgagtatttacttgtttggctgcag
species | Physcomitrella patens |
transcript | PP1S276_96V6.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATEST: gi|162254847|gb|FC430824.1|FC430824
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAAT
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|162177777|gb|FC354611.1|FC354611
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|162195520|gb|FC370911.1|FC370911
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|37836365|gb|BJ594373.1|BJ594373
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|162178338|gb|FC355160.1|FC355160
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|37853269|gb|BJ611277.1|BJ611277
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|162177778|gb|FC354612.1|FC354612
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|37853098|gb|BJ611106.1|BJ611106
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|18340738|gb|BJ172769.1|BJ172769
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|37839630|gb|BJ597638.1|BJ597638
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|162178337|gb|FC355159.1|FC355159
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|18339203|gb|BJ171230.1|BJ171230
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|18336017|gb|BJ168039.1|BJ168039
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|162184901|gb|FC361411.1|FC361411
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|37838822|gb|BJ596830.1|BJ596830
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|37832146|gb|BJ590158.1|BJ590158
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCCEST: gi|18338550|gb|BJ170574.1|BJ170574
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
EST: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAG GCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
genomic: AAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgta ... ttggctgcagGCAACAGATGTCGTTCCCAATAATGCAAGGTCCCACACCTGTTTGTTGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTCGGAACGTGTTGATGAATACAGTCTTGGTGCGAGGGAGAATTTGCAAGATGCTGTACAAGCTGTGACTACGATTCTTGGGATGCAAATTTGTGAGgtaaagtgtattggattgaactaagtgcatctctatgcttgtgtgtttcgttctgagcgatgtgtgtttcatgttgtacaagcggcacttgcactgagtatttacttgtttggctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG