1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TAACAGTGTACAGACAAGTCAACATATACCTGTTAAGAGCCGACAGAATTATTTTAAGGATGAAAAAACAAGGCAACCTTGCATCATCTTCTCTTTCGAGgtctgaagttcaaacaaattttatctcaaaagcagggtgtagttccctagcatggaatgtatattagaaggcttacaatatgctcacaatagttttgaag...
species | Physcomitrella patens |
transcript | PP1S10_296V6.2 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: ATTTTAAGGATGAAAAAACAAGGCAACCTTGCATCATCTTCTCTTTCGAG GTTCTGGAGTGATCCATTTGATGAAGTCAAGAAGATGCAACTGCAAAGATTEST: gi|18336101|gb|BJ168123.1|BJ168123
genomic: ATTTTAAGGATGAAAAAACAAGGCAACCTTGCATCATCTTCTCTTTCGAGgtctgaagtt ... tttttatcagGTTCTGGAGTGATCCATTTGATGAAGTCAAGAAGATGCAACTGCAAAGATT
EST: ATTTTAAGGATGAAAAAACAAGGCAACCTTGCATCATCTTCTCTTTCGAG GTTCTGGAGTGATCCATTTGATGAAGTCAAGAAGATGCA-CTGCAAAGATTEST: gi|18339664|gb|BJ171691.1|BJ171691
genomic: ATTTTAAGGATGAAAAAACAAGGCAACCTTGCATCATCTTCTCTTTCGAGgtctgaagtt ... tttttatcagGTTCTGGAGTGATCCATTTGATGAAGTCAAGAAGATGCAACTGCAAAGATT
EST: ATTTTAAGGATGAAAAAACAAGGCAACCTTGCATCATCTTCTCTTTCGAG GTTCTGGAGTGATCCATTTGATGAAGTCAAGAAGATGCAACTGCAAAGATT
genomic: ATTTTAAGGATGAAAAAACAAGGCAACCTTGCATCATCTTCTCTTTCGAGgtctgaagtt ... tttttatcagGTTCTGGAGTGATCCATTTGATGAAGTCAAGAAGATGCAACTGCAAAGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACAGTGTACAGACAAGTCAACATATACCTGTTAAGAGCCGACAGAATTATTTTAAGGATGAAAAAACAAGGCAACCTTGCATCATCTTCTCTTTCGAGgtctgaagttcaaacaaattttatctcaaaagcagggtgtagttccctagcatggaatgtatattagaaggcttacaatatgctcacaatagttttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaacaaa