1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTGTGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTGgtacgtagctatgcttgccaagtccccgtatcaatttaattttgatttgatttgctgtttcgagacgaactttgtaggcttttttattcttattctttat...
species | Physcomitrella patens |
transcript | PP1S9_238V6.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTG CGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACCEST: gi|162202060|gb|FC377266.1|FC377266
genomic: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTGgtacgtagct ... gcgcttgcagCGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACC
EST: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTG CGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACCEST: gi|162188456|gb|FC365054.1|FC365054
genomic: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTGgtacgtagct ... gcgcttgcagCGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACC
EST: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTG CGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACCEST: gi|162188457|gb|FC365055.1|FC365055
genomic: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTGgtacgtagct ... gcgcttgcagCGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACC
EST: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTG CGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACCEST: gi|162195892|gb|FC375625.1|FC375625
genomic: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTGgtacgtagct ... gcgcttgcagCGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACC
EST: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTG CGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACCEST: gi|162191141|gb|FC367403.1|FC367403
genomic: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTGgtacgtagct ... gcgcttgcagCGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACC
EST: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTG CGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACCEST: gi|162246868|gb|FC424746.1|FC424746
genomic: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTGgtacgtagct ... gcgcttgcagCGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACC
EST: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTG CGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACCEST: gi|162177322|gb|FC353479.1|FC353479
genomic: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTGgtacgtagct ... gcgcttgcagCGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACC
EST: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTG CGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACCEST: gi|162177323|gb|FC353480.1|FC353480
genomic: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTGgtacgtagct ... gcgcttgcagCGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACC
EST: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTG CGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACCEST: gi|162191707|gb|FC367440.1|FC367440
genomic: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTGgtacgtagct ... gcgcttgcagCGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACC
EST: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTG CGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACC
genomic: TGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTGgtacgtagct ... gcgcttgcagCGTGAAGCAGATCTGCATAAGCTGGCGAAAGCTCTGCTTGAAAATGAAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTGCGACTACTCAAAGAAGCTTATGAACGTGTTAAGAAGTTATTAAAACTGgtacgtagctatgcttgccaagtccccgtatcaatttaattttgatttgatttgctgtttcgagacgaactttgtaggcttttttattcttattctttat
- - - - - - - AAAGAA
- - - - - - - - AAGAAG
- - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - AGAAGT