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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGGAGAAAACATCACTAAACGCAGCAGTGCGGCTCTTTCAAACTAAATTTTTGGACCCACTCCAACGTGCGAACAAGgtaacgaatatgttaaagcaatggcacaccgggttgaagtgaagcaaattccaatatcaattgtctagtttggatcatatagtcaatttcaatgtgtacatattttaacttataattgtcgcacttgttgacag

Basic information

species Physcomitrella patens
transcript PP1S90_95V6.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208375020|gb|DC956416.1|DC956416
EST:     TGCGGCTCTTTCAAACTAAATTTTTGGACCCACTCCAACGTGCGAACAAG                         GCGGAAATTACATGTTCTTATCAACAGAAATTACAGCAGACCAGTGCTACA
genomic: TGCGGCTCTTTCAAACTAAATTTTTGGACCCACTCCAACGTGCGAACAAGgtaacgaata ... ttgttgacagGCGGAAATTACATGTTCTTATCAACAGAAATTACAGCAGACCAGTGCTACA
EST: gi|18341360|gb|BJ173395.1|BJ173395
EST:     TGCGGCTCTTTCAAACTAAATTTTTGGACCCACTCCAACGTGCGAACAAG                         GCGGAAATTACATGTTCTTATC
genomic: TGCGGCTCTTTCAAACTAAATTTTTGGACCCACTCCAACGTGCGAACAAGgtaacgaata ... ttgttgacagGCGGAAATTACATGTTCTTATC
EST: gi|18337995|gb|BJ170019.1|BJ170019
EST:     TGCGGCTCTTTCAAACTAAATTTTTGGACCCACTCCAACGTGCGAACAAG                         GCGGAAATTACATGTTCTTATCAACAGAAATTACAGCAGACCAGTGCTACA
genomic: TGCGGCTCTTTCAAACTAAATTTTTGGACCCACTCCAACGTGCGAACAAGgtaacgaata ... ttgttgacagGCGGAAATTACATGTTCTTATCAACAGAAATTACAGCAGACCAGTGCTACA
EST: gi|162191193|gb|FC367871.1|FC367871
EST:     TGCGGCTCTTTCAAACTAAATTTTTGGACCCACTCCAACGTGCGAACAAG                         GCGGAAATTGCATGTTCTTATCAACAGAAATTACAGCAGACCAGTGCTACA
genomic: TGCGGCTCTTTCAAACTAAATTTTTGGACCCACTCCAACGTGCGAACAAGgtaacgaata ... ttgttgacagGCGGAAATTACATGTTCTTATCAACAGAAATTACAGCAGACCAGTGCTACA