1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
CGAGGGATTCTATGAAAATTTCGACGCTGATTTTATCGGGATCAGGACGAAGGCTCGTGAGGTTTTGCAGCGGGAGGATGACCTGAACGAGATCGTGCAGgtgaggcatttcaaccttatgctagtctggttattcgtatcttatataatttcaatagcgaagtctttatatttgagaaggcacctttctgccaggtggaatttctagtcatcatttcgtcttcgttcctgcctattcctgcgaaggtaatagtaagttgtcgtctgttgcag
species | Physcomitrella patens |
transcript | PP1S8_312V6.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AGGCTCGTGAGGTTTTGCAGCGGGAGGATGACCTGAACGAGATCGTGCAG CTTGTTGGAAAGGATGCTTTGGCAGAAACTGATAAAATCACCTTGGAAGTTEST: gi|162154256|gb|FC330387.1|FC330387
genomic: AGGCTCGTGAGGTTTTGCAGCGGGAGGATGACCTGAACGAGATCGTGCAGgtgaggcatt ... tctgttgcagCTTGTTGGAAAGGATGCTTTGGCAGAAACTGATAAAATCACCTTGGAAGTT
EST: AGGCTCGTGAGGTTTTGCAGCGGGAGGATGACCTGAACGAGATCGTGCAG CTTGTTGGAAAGGATGCTTTGGCAGAAACTGATAAAATCACCTTGGAAGTTEST: gi|208354120|gb|DC957382.1|DC957382
genomic: AGGCTCGTGAGGTTTTGCAGCGGGAGGATGACCTGAACGAGATCGTGCAGgtgaggcatt ... tctgttgcagCTTGTTGGAAAGGATGCTTTGGCAGAAACTGATAAAATCACCTTGGAAGTT
EST: AGGCTCGTGAGGTTTTGCAGCGGGAGGATGACCTGAACGAGATCGTGCAG CTTGTTGGAAAGGATGCTTTGGCAGAAACTGATAAAATCACCTTGGAAGTTEST: gi|37843692|gb|BJ601700.1|BJ601700
genomic: AGGCTCGTGAGGTTTTGCAGCGGGAGGATGACCTGAACGAGATCGTGCAGgtgaggcatt ... tctgttgcagCTTGTTGGAAAGGATGCTTTGGCAGAAACTGATAAAATCACCTTGGAAGTT
EST: AGGCTCGTGAGGTTTTGCAGCGGGAGGATGACCTGAACGAGATCGTGCAG CTTGTTGGAAAGGATGCTTTGGCAGAAACTGATAAAATCACCTTGGAAGTT
genomic: AGGCTCGTGAGGTTTTGCAGCGGGAGGATGACCTGAACGAGATCGTGCAGgtgaggcatt ... tctgttgcagCTTGTTGGAAAGGATGCTTTGGCAGAAACTGATAAAATCACCTTGGAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGGATTCTATGAAAATTTCGACGCTGATTTTATCGGGATCAGGACGAAGGCTCGTGAGGTTTTGCAGCGGGAGGATGACCTGAACGAGATCGTGCAGgtgaggcatttcaaccttatgctagtctggttattcgtatcttatataatttcaatagcgaagtctttatatttgagaaggcacctttctgccaggtggaatttctagtcatcatttcgtcttcgttcctgcctattcctgcgaaggtaatagtaagttgtcgtctgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC