1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TTTTGCCCGAGGTCTGAATGTATCGCTCTCAACCGATGATCCTCTACAAATTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAGgtgacgcctctgtccgatctgttcttgccgtatctgactgaattcctaatttttagatcatattttcattaatatcatacatttttctgtgtatcag
species | Physcomitrella patens |
transcript | PP1S77_89V6.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAG GTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTTEST: gi|162194297|gb|FC369520.1|FC369520
genomic: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAGgtgacgcctc ... tgtgtatcagGTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTT
EST: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAG GTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTTEST: gi|19779903|gb|BQ039488.1|BQ039488
genomic: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAGgtgacgcctc ... tgtgtatcagGTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTT
EST: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAG GTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTTEST: gi|162268980|gb|FC445472.1|FC445472
genomic: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAGgtgacgcctc ... tgtgtatcagGTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTT
EST: TACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAG GTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTTEST: gi|7147916|gb|AW509838.1|AW509838
genomic: TACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAGgtgacgcctc ... tgtgtatcagGTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTT
EST: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAG GTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTTEST: gi|162268981|gb|FC445473.1|FC445473
genomic: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAGgtgacgcctc ... tgtgtatcagGTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTT
EST: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAG GTGTGGAAGCTGAGCTCCTGTGACCTCTEST: gi|162206777|gb|FC383250.1|FC383250
genomic: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAGgtgacgcctc ... tgtgtatcagGTGTGGAAGCTGAGCTCCTGTGACCTCT
EST: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAG GTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTTEST: gi|37852950|gb|BJ610958.1|BJ610958
genomic: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAGgtgacgcctc ... tgtgtatcagGTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTT
EST: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAG GTGTGGAAGCTGAGCTCCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTEST: gi|162171487|gb|FC346762.1|FC346762
genomic: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAGgtgacgcctc ... tgtgtatcagGTGTGGAAGCTGAGCT-CCTGTGACCTCTGTGAAATTGCACGCAATTCTGT
EST: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAG GTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTTEST: gi|37851047|gb|BJ609055.1|BJ609055
genomic: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAGgtgacgcctc ... tgtgtatcagGTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTT
EST: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAG GTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTT
genomic: TTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAGgtgacgcctc ... tgtgtatcagGTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTGCCCGAGGTCTGAATGTATCGCTCTCAACCGATGATCCTCTACAAATTCATCTTACTAAAGAGCCTCTTGTTGAAGAGTACAGCATTGCAGCACAGgtgacgcctctgtccgatctgttcttgccgtatctgactgaattcctaatttttagatcatattttcattaatatcatacatttttctgtgtatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA