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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAACCTCTCGTGGACGAGACTTGGGTCTTGGTTGGGTACTGTGCTTTTACAGgtatgattcattttgtttcagtttagtttgcgttgctcatttatgtgattgtttcctaccataaatagctagaggacaattttaggagtgggtgaagttt...

Basic information

species Physcomitrella patens
transcript PP1S68_234V6.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37829592|gb|BJ587604.1|BJ587604
EST:     ACCTCTCGTGGACGAGACTTGGGTCTTGGTTGGGTACTGTGCTTTTACAG                         TTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGG
genomic: ACCTCTCGTGGACGAGACTTGGGTCTTGGTTGGGTACTGTGCTTTTACAGgtatgattca ... aaacttgcagTTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGG
EST: gi|37827814|gb|BJ585826.1|BJ585826
EST:     ACCTCTCGTGGACGAGACTTGGGTCTTGGTTGGGTACTGTGCTTTTACAG                         TTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGG
genomic: ACCTCTCGTGGACGAGACTTGGGTCTTGGTTGGGTACTGTGCTTTTACAGgtatgattca ... aaacttgcagTTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGG
EST: gi|208395924|gb|DC920346.1|DC920346
EST:     ACCTCTCGTGGACGAGACTTGGGTCTTGGTTGGGTACTGTGCTTTTACAG                         TTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGG
genomic: ACCTCTCGTGGACGAGACTTGGGTCTTGGTTGGGTACTGTGCTTTTACAGgtatgattca ... aaacttgcagTTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGG
EST: gi|208389101|gb|DC945677.1|DC945677
EST:     ACCTCTCGTGGACGAGACTTGGGTCTTGGTTGGGTACTGTGCTTTTACAG                         TTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGG
genomic: ACCTCTCGTGGACGAGACTTGGGTCTTGGTTGGGTACTGTGCTTTTACAGgtatgattca ... aaacttgcagTTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGG
EST: gi|67700196|gb|BJ960429.1|BJ960429
EST:     ACCTCTCGTGGACGAGACTTGGGTCTTGGTTGGGTACTGTGCTTTTACAG                         TTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGG
genomic: ACCTCTCGTGGACGAGACTTGGGTCTTGGTTGGGTACTGTGCTTTTACAGgtatgattca ... aaacttgcagTTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGG
EST: gi|208378180|gb|DC918801.1|DC918801
EST:     ACCTCTCGTGGACGAGACTTGGGTCTTGGTTGGGTACTGTGCTTTTACAG                         TTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGG
genomic: ACCTCTCGTGGACGAGACTTGGGTCTTGGTTGGGTACTGTGCTTTTACAGgtatgattca ... aaacttgcagTTTGTCTCTACGGCCACTTTGTTGTAAGTGTTATTCACGAGATCACAGAGG