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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGCAGAGTAGACGGGCCAGTGAGGAGGACGTTGCCCGAGCCGCTGCAGCTGGTGCATCGGCTGCCTTGACCCTTCTTCTAATACCTGCTCTTAAAGAGgtaactattttgtcatttcaccccatactgatagtagacgatggagcttaatagaaaggataggaaagtgctactaagtctcactttgcaaacagctttt...

Basic information

species Physcomitrella patens
transcript PP1S59_173V6.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37832630|gb|BJ590642.1|BJ590642
EST:     CTCTTAAAGAG                         ACTGCAGCTGAGCAGTCGGAAGGGCCTGCTTTAAGAGCTGCAGCTGATGCA
genomic: CTCTTAAAGAGgtaactattt ... tttcatgcagACTGCAGCTGAGCAGTCGGAAGGGCCTGCTTTAAGAGCTGCAGCTGATGCA
EST: gi|100369515|gb|BY948129.1|BY948129
EST:     TGGTGCATCGGCTGCCTTGACCCNTTCT-CTAATACCTGCTCT-AAAGAG                         ACTGCAGCTGAGCAGTCGGAAGGGGCTGCTTTNAGAGCTGCAGCTGATGC
genomic: TGGTGCATCGGCTGCCTTGACCC-TTCTTCTAATACCTGCTCTTAAAGAGgtaactattt ... tttcatgcagACTGCAGCTGAGCAGTCGGAAGGGCCTGCTTTAAGAGCTGCAGCTGATGC
EST: gi|162266710|gb|FC442863.1|FC442863
EST:     CTGGTGCATCGGCTGCCTTGACCCTTCTTCTAATACCTGCTCTTAAAGAG                         ACTGCAGCTGAGCAGTCGGAAGGGCCTGCTTTAAGAGCTGCAGCTGATGCA
genomic: CTGGTGCATCGGCTGCCTTGACCCTTCTTCTAATACCTGCTCTTAAAGAGgtaactattt ... tttcatgcagACTGCAGCTGAGCAGTCGGAAGGGCCTGCTTTAAGAGCTGCAGCTGATGCA
EST: gi|162266709|gb|FC442862.1|FC442862
EST:     CTGGTGCATCGGCTGCCTTGACCCTTCTTCTAATACCTGCTCTTAAAGAG                         ACTGCAGCTGAGCAGTCGGAAGGGCCTGCTTTAAGAGCTGCAGCTGATGCA
genomic: CTGGTGCATCGGCTGCCTTGACCCTTCTTCTAATACCTGCTCTTAAAGAGgtaactattt ... tttcatgcagACTGCAGCTGAGCAGTCGGAAGGGCCTGCTTTAAGAGCTGCAGCTGATGCA
EST: gi|67720706|gb|BJ970965.1|BJ970965
EST:     CTGGTGCATCGGCTGCCTTGACCCTTCTTCTAATACCTGCTCTTAAAGAG                         ACTGCAGCTGAGCAGTCGGAAGGGCCTGCTTTAAGAGCTGCAGCTGATGCA
genomic: CTGGTGCATCGGCTGCCTTGACCCTTCTTCTAATACCTGCTCTTAAAGAGgtaactattt ... tttcatgcagACTGCAGCTGAGCAGTCGGAAGGGCCTGCTTTAAGAGCTGCAGCTGATGCA