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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTGGACTCCGATGATGCAAAGAAACTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccgcactcattttgtgccactgcttctcaaatttatttccgtgtttattgtgtggcgcattcaagccgtagtggtccaggtggctgttgagaaatgtcgcttattaatgcaattctgaatttgcttgtaatttttgtactctgctcagagtgtgatttgtggatctgacccag

Basic information

species Physcomitrella patens
transcript PP1S4_12V6.2
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37829340|gb|BJ587352.1|BJ587352
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|18341150|gb|BJ173183.1|BJ173183
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|18338573|gb|BJ170597.1|BJ170597
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|162184967|gb|FC362413.1|FC362413
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|162187300|gb|FC363458.1|FC363458
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|162184968|gb|FC362414.1|FC362414
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|208382001|gb|DC923846.1|DC923846
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|162206764|gb|FC383237.1|FC383237
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|67725611|gb|BJ975870.1|BJ975870
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|162206765|gb|FC383238.1|FC383238
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|37850179|gb|BJ608187.1|BJ608187
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|162257952|gb|FC433838.1|FC433838
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|162175774|gb|FC352076.1|FC352076
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|162178864|gb|FC354796.1|FC354796
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|67692041|gb|BJ952274.1|BJ952274
EST:     CTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACG
genomic: CTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATC-AAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACG
EST: gi|37828076|gb|BJ586088.1|BJ586088
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|162159186|gb|FC334357.1|FC334357
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|162196533|gb|FC374420.1|FC374420
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|162185023|gb|FC362469.1|FC362469
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTNGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|67693718|gb|BJ953951.1|BJ953951
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|162187301|gb|FC363459.1|FC363459
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|67727198|gb|BJ977457.1|BJ977457
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
EST: gi|67695071|gb|BJ955304.1|BJ955304
EST:     CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAA                         CTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA
genomic: CTCATGGCTCATCTTGTTGATCTCCAATCAAAGCTTGGCGATGTGAACAAgtaacttccg ... tctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGA