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GTGGTCAAAAGAGTAGGGTAGCTTTTGCAAAAATCACTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTGgtaaattttctctcagcgaataaacgtcacacgttgaacctttacaaaagcatttttgtaaagatttgcattactatttgctttgctggccactttgagt...
species | Physcomitrella patens |
transcript | PP1S47_97V6.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTG GATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAEST: gi|162199129|gb|FC375821.1|FC375821
genomic: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTGgtaaattttc ... gctgatgcagGATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGA
EST: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTG GATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAEST: gi|37831033|gb|BJ589045.1|BJ589045
genomic: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTGgtaaattttc ... gctgatgcagGATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGA
EST: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTG GATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAEST: gi|18341144|gb|BJ173177.1|BJ173177
genomic: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTGgtaaattttc ... gctgatgcagGATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGA
EST: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTG GATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAEST: gi|18337417|gb|BJ169441.1|BJ169441
genomic: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTGgtaaattttc ... gctgatgcagGATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGA
EST: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTG GATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAEST: gi|37828058|gb|BJ586070.1|BJ586070
genomic: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTGgtaaattttc ... gctgatgcagGATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGA
EST: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTG GATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAEST: gi|162187556|gb|FC363818.1|FC363818
genomic: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTGgtaaattttc ... gctgatgcagGATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGA
EST: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTG GATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAEST: gi|37836283|gb|BJ594291.1|BJ594291
genomic: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTGgtaaattttc ... gctgatgcagGATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGA
EST: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTG GATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAEST: gi|162174579|gb|FC350234.1|FC350234
genomic: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTGgtaaattttc ... gctgatgcagGATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGA
EST: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTG GATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGA
genomic: CTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTGgtaaattttc ... gctgatgcagGATCTTGATGCTGTGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTCAAAAGAGTAGGGTAGCTTTTGCAAAAATCACTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTGgtaaattttctctcagcgaataaacgtcacacgttgaacctttacaaaagcatttttgtaaagatttgcattactatttgctttgctggccactttgagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA