1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GTCATCCTCAACATATTTGGTACTCTCCACAAGATGCTGCTGTGGCTCTACAGTATCTTCTCTCCTCAGCTGATGCGTTGGGTTTAAGCAAACCCTACAGgttagctttcaatcaaaagtcttcctgacctctaaactctttgcttcgtttctatggcaagcatccaaactagagtgtttggtcaatatgagtcatgttctaagtgatctgagggacttggtgcactggggaattgactacacacttttattacattggattcaatcggcag
species | Physcomitrella patens |
transcript | PP1S329_23V6.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GTTTAAGCAAACCCTACAG GTACGATGTTGTGGATCTGACACGGCAAGTGCTTTCAAAACTAGCGAACCAEST: gi|162244026|gb|FC422342.1|FC422342
genomic: GTTTAAGCAAACCCTACAGgttagctttc ... caatcggcagGTACGATGTTGTGGATCTGACACGGCAAGTGCTTTCAAAACTAGCGAACCA
EST: TCAGCTGATGCG-TGGGTTTAAGCAAACCCTACAG GTACGATGTTGTGGATCTGACACGGCAAGTGCTTTCAAAACTAGCGAACCAEST: gi|162244027|gb|FC422343.1|FC422343
genomic: TCAGCTGATGCGTTGGGTTTAAGCAAACCCTACAGgttagctttc ... caatcggcagGTACGATGTTGTGGATCTGACACGGCAAGTGCTTTCAAAACTAGCGAACCA
EST: CAGTATCTTCTCTCCTCAGCTGATGCGTTGGGTTTAAGCAAACCCTACAG GTACGATGTTGTGGATCTGACACGGCAAGTGCTTTCAAAACTAGCGAACCAEST: gi|37833090|gb|BJ591102.1|BJ591102
genomic: CAGTATCTTCTCTCCTCAGCTGATGCGTTGGGTTTAAGCAAACCCTACAGgttagctttc ... caatcggcagGTACGATGTTGTGGATCTGACACGGCAAGTGCTTTCAAAACTAGCGAACCA
EST: TCAGCTGATGCGTTGGGTTTAAGCAAACCCTACAGG GTACGATGTTGTGGATCTGACACGGCAAGTGCTTTCAAAACTAGCGAACC
genomic: TCAGCTGATGCGTTGGGTTTAAGCAAACCCTACA-Ggttagctttc ... caatcggcagGTACGATGTTGTGGATCTGACACGGCAAGTGCTTTCAAAACTAGCGAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATCCTCAACATATTTGGTACTCTCCACAAGATGCTGCTGTGGCTCTACAGTATCTTCTCTCCTCAGCTGATGCGTTGGGTTTAAGCAAACCCTACAGgttagctttcaatcaaaagtcttcctgacctctaaactctttgcttcgtttctatggcaagcatccaaactagagtgtttggtcaatatgagtcatgttctaagtgatctgagggacttggtgcactggggaattgactacacacttttattacattggattcaatcggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA