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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGACGCTCTAGCAAGGATGGTGGATCCAGCATTGAAGGGCATGTATCCTGCCAAATCTCTCTCCCGTTTCGCTGACGTTGTTGCGCTTTGTGTCCAGgtatgctactcgtgttctcaatcaatttcttggcatattcactgataggcattatattcgagtggaaaaccaggtttcagctcttaaagaaagactttttcttcctggatctttagagcagactcgaaattacgtaacttgcttcattcctgttctgcag

Basic information

species Physcomitrella patens
transcript PP1S284_52V6.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S284_52V6.1 (Physcomitrella patens), 5'ss of exon 16
lower sequence: LOC_Os10g25090.1 (Oryza sativa), 5'ss of exon 15
CATCGACGCTCTAGCAAGGATGGTGGATCCAGCATTGAAGGGCATGTATCCTGCCAAATCTCTCTCCCGTTTCGCTGACGTTGTTGCGCTTTGTGTCCAGgtatgctactcgtgttctcaatcaatttcttggcatattcactgataggcattatattc--gagtggaaaaccaggtttcagctctta--aagaaagactttttcttcctggatctttagagcagactcgaaattacgtaacttgcttcattcctgttctgcag
|||||| ||  | |   ||||||| || |||||  | |||||| |||| ||||||||||| || ||||||||||| |||||  ||||||| |||||||||||||   ||     ||| |        || ||| | | |  | | | | ||  ||||||   | || | | | ||| |     |  ||  ||  || || ||  ||   |                                                      
CATCGATGCGTTGGACCGGATGGTCGACCCAGCGCTCAAGGGCCTGTACCCTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc----ttcac--------tcctggtacaat-gcagtttgccagcatattcataactgaacaccaaggatctgaattataccaaccaaaaccttcactatttcag---------------------------------------------------

upper sequence: PP1S284_52V6.1 (Physcomitrella patens), 5'ss of exon 16
lower sequence: LOC_Os02g09740.2 (Oryza sativa), 5'ss of exon 15
CATCGACGCTCTAGCAAGGATGGTGGATCCAGCATTGAAGGGCATGTATCCTGCCAAATCTCTCTCCCGTTTCGCTGACGTTGTTGCGCTTTGTGTCCAGgtatgctactcgtgttctcaatcaatttcttggcatattcactgataggcattatattcgagtggaaaaccaggtttcagctcttaaagaaagactttttcttcctggatctttagagcagactcgaaattacgtaacttgcttcattcctgttctgcag
 ||||| || || || | |||||||||||||||||| || || ||||| ||||| ||||| ||||||||||| || ||| |  | ||||| ||||| |||||||| | |  | |||  ||       |  ||  | ||       ||| ||||  ||    ||  | |   |    | ||| |  |  || |        |||| || |  |  | |   |                                       
TATCGATGCGCTTGCTAAGATGGTGGATCCAGCATTAAATGGAATGTACCCTGCTAAATCGCTCTCCCGTTTTGCGGACATAATCGCGCTGTGTGTTCAGgtatgtt-catgcgtttgca-------ttgtgatagatctt----tagacattg-atataggtacatagtaatcagtgagcacacatggaga-------ccttcatgaaa-tccaaaatgg---------------------------------------

upper sequence: PP1S284_52V6.1 (Physcomitrella patens), 5'ss of exon 16
lower sequence: LOC_Os06g42800.1 (Oryza sativa), 5'ss of exon 15
CATCGACGCTCTAGCAAGGATGGTGGATCCAGCATTGAAGGGCATGTATCCTGCCAAATCTCTCTCCCGTTTCGCTGACGTTGTTGCGCTTTGTGTCCAGgtatgctactcgtgttctcaatcaatttcttggcatattcactgataggcattatattcgagtggaaaaccaggttt-cagctcttaa--agaaagactttttcttcctggatctttagagcagactcgaaattacgtaacttgcttcattcctgttctgcag
|||||| || || || | |||||| ||||||||| || | || ||||| ||||| ||||| |||||||||||||||||| |  ||||  | ||||||||||||   | |      | ||   || ||  ||| | |    |    ||  ||||   |    |   ||||      || |||||  |||   |||  |||                                                                
CATCGATGCGCTTGCCAAGATGGTTGATCCAGCAATGGATGGGATGTACCCTGCAAAATCACTCTCCCGTTTCGCTGACATAATTGCATTGTGTGTCCAGgtaatattcgttatctttcgcacatttctttgtcctgcatatgactacccatttcttgttcgcccaaaattgttcttacagcttctaatatgaacaactc---------------------------------------------------------------