1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GTGCTAAAGTGCTGGTAGGAGGCAAACGACATAGTCTAGGAGGCACATTTTATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggcccttggctttttcattaaataggtgtttatgctagtggatgcacactgaaggtagcttgctgaaaggagtaaaaatgcatgattgtggatgtt...
species | Physcomitrella patens |
transcript | PP1S279_72V6.2 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TATCANCCTACTGTTCTNTGCGGTTGTANCGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|162175881|gb|FC351559.1|FC351559
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|162257980|gb|FC433866.1|FC433866
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|162188380|gb|FC364250.1|FC364250
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|67695860|gb|BJ956093.1|BJ956093
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|37848440|gb|BJ606448.1|BJ606448
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|162175611|gb|FC351003.1|FC351003
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|37842855|gb|BJ600863.1|BJ600863
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|37847436|gb|BJ605444.1|BJ605444
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|37838258|gb|BJ596266.1|BJ596266
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACNTCTTATGCGCTTCCAGACGGATGAEST: gi|208345206|gb|DC925476.1|DC925476
genomic: TAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|37851842|gb|BJ609850.1|BJ609850
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGGTGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|162167720|gb|FC344034.1|FC344034
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|37842399|gb|BJ600407.1|BJ600407
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|162175090|gb|FC351158.1|FC351158
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGTTAATATTTAG AGAGGAGGTTTTTGGTCCGGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|162170328|gb|FC346525.1|FC346525
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|37841695|gb|BJ599703.1|BJ599703
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|162261210|gb|FC437227.1|FC437227
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|208365822|gb|DC951057.1|DC951057
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGAEST: gi|37851044|gb|BJ609052.1|BJ609052
genomic: TATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
EST: GTAACGATGAGATGNTAATATTTAG AGAGGAGGTTTTTGGTCCTGTAGCACNTCTTATGCGCTTCCAGACGGATGA
genomic: GTAACGATGAGATGCTAATATTTAGgtgaggccct ... atttgtaaagAGAGGAGGTTTTTGGTCCTGTAGCACCTCTTATGCGCTTCCAGACGGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTAAAGTGCTGGTAGGAGGCAAACGACATAGTCTAGGAGGCACATTTTATCAACCTACTGTTCTTTGCGGTTGTAACGATGAGATGCTAATATTTAGgtgaggcccttggctttttcattaaataggtgtttatgctagtggatgcacactgaaggtagcttgctgaaaggagtaaaaatgcatgattgtggatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG