1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTGGATCCCAGTACAGGTGATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAGgtgggatttctccagcacagtagatgtctgttattttgtccttcacgtgcattggacttagttctggtatttggatcctgaagcggaagaatcaattagt...
species | Physcomitrella patens |
transcript | PP1S276_96V6.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: ATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAG ATTACAGCACCTGACTACATCCTGAAGGAAGGAGTGTCAAACTTCAGAAATEST: gi|162177777|gb|FC354611.1|FC354611
genomic: ATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAGgtgggatttc ... catgcaccagATTACAGCACCTGACTACATCCTGAAGGAAGGAGTGTCAAACTTCAGAAAT
EST: ATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAG ATTACAGCACCTGACTACATCCTGAAGGAAGGAGTGTCAAACTTCAGAAATEST: gi|162178338|gb|FC355160.1|FC355160
genomic: ATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAGgtgggatttc ... catgcaccagATTACAGCACCTGACTACATCCTGAAGGAAGGAGTGTCAAACTTCAGAAAT
EST: ATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAG ATTACAGCACCTGACTACATCCTGAAGGAAGGAGTGTCAAACTTCAGAAATEST: gi|162177778|gb|FC354612.1|FC354612
genomic: ATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAGgtgggatttc ... catgcaccagATTACAGCACCTGACTACATCCTGAAGGAAGGAGTGTCAAACTTCAGAAAT
EST: ATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAG ATTACAGCACCTGACTACATCCTGAAGGAAGGAGTGTCAAACTTCAGAAATEST: gi|100373379|gb|BY949300.1|BY949300
genomic: ATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAGgtgggatttc ... catgcaccagATTACAGCACCTGACTACATCCTGAAGGAAGGAGTGTCAAACTTCAGAAAT
EST: ATGCAGATGATACCGGGTACGAAGATGAGTACCNACTAGAAGATTTGGAG ATTACAGCACCTGACTACATCCTGAANGGAAG-AGTGTCAAACTTCAGAAAEST: gi|162178337|gb|FC355159.1|FC355159
genomic: ATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAGgtgggatttc ... catgcaccagATTACAGCACCTGACTACATCCTGAA-GGAAGGAGTGTCAAACTTCAGAAA
EST: ATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAG ATTACAGCACCTGACTACATCCTGAAGGAAGGAGTGTCAAACTTCAGAAATEST: gi|100366973|gb|BY948304.1|BY948304
genomic: ATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAGgtgggatttc ... catgcaccagATTACAGCACCTGACTACATCCTGAAGGAAGGAGTGTCAAACTTCAGAAAT
EST: ATGCAGATGATACCGGGTACGAAGATGAGTACCNACTAGAAGATTTGGAG ATTACAGCACCTGACTACATCCTGAANGAAGGAGTGTCNAACTTCAGAAATEST: gi|18338550|gb|BJ170574.1|BJ170574
genomic: ATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAGgtgggatttc ... catgcaccagATTACAGCACCTGACTACATCCTGAAGGAAGGAGTGTCAAACTTCAGAAAT
EST: AGATGAGTACCAACTAGAAGATTTGGAG ATTACAGCACCTGACTACATCNTGAAGGAAGGAGTGTCAAACTTCAGAAAT
genomic: AGATGAGTACCAACTAGAAGATTTGGAGgtgggatttc ... catgcaccagATTACAGCACCTGACTACATCCTGAAGGAAGGAGTGTCAAACTTCAGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGATCCCAGTACAGGTGATGCAGATGATACCGGGTACGAAGATGAGTACCAACTAGAAGATTTGGAGgtgggatttctccagcacagtagatgtctgttattttgtccttcacgtgcattggacttagttctggtatttggatcctgaagcggaagaatcaattagt
- - - - - - - - - - GCAGAT
- - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG