Sequence
atgc intronic sequence ATGC exonic sequenceAGGACATTTTGGAGCGAAGCCTGAGATGGTTCTCAAGTGTGGCTTTATCGCGTGGGCACAGATGGGAGATGCCAATGCCAGCATCCCTACTCCTGAACCGgtgcgttgcggttatgagacacttccaacttatctctgaacactagcttgctttcagcattagaatcgatttggtttatattttgaggctaataagcctt...
Basic information
species | Physcomitrella patens |
transcript | PP1S274_69V6.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S274_69V6.1 (Physcomitrella patens), 5'ss of exon 16
lower sequence: EFJ28075 (Selaginella moellendorffii), 5'ss of exon 15
AGGACATTTTGGAGCGAAGCCTGAGATGGTTCTCAAGTGTGGCTTTATCGCGTGGGCACAGATGGGAGATGCCAATGCCAGCATCCCTACTCCTGAACCGgtgcgttgcggttatgagacacttccaacttatctctgaacactagcttgctttcagcattagaatcgatttggtttatattttgaggctaataagcctt
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TGGCTTTTTCGGAGCTAAACCGGAGCTCGTTATTAAAGGTGGCGACGTTGCTTGGGCGCAAATGGGAGATGCCAATGCCAGCATCCCAACTCCAGAACCGgtaaaaagtccttcct--tcgttcgtggatagtttttg--ttttgttttgttttctttcttacattaacctttgatcat-taatgatacag---------
upper sequence: PP1S274_69V6.1 (Physcomitrella patens), 5'ss of exon 16
lower sequence: EFJ29500 (Selaginella moellendorffii), 5'ss of exon 14
AGGACATTTTGGAGCGAAGCCTGAGATGGTTCTCAAGTGTGGCTTTATCGCGTGGGCACAGATGGGAGATGCCAATGCCAGCATCCCTACTCCTGAACCGgtgcgttgcggttatgagacacttccaacttatctctgaacactagcttgctttcagcattagaatcgatttggtttatattttgaggctaataagcctt
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AGGCTTTTTCGGAGCTAAACCGGAGCTCGTTATTAAAGGTGGCGACGTTGCTTGGGCGCAAATGGGAGATGCCAATGCCAGCATCCCAACTCCAGAACCGgtaaaaagtccttccttcgttcgtggatagttttcttttcttttcttttcttttctttcttacattaacctttgatcat-taatgatacag---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162279431|gb|FC455547.1|FC455547EST: CGTGGGCACAGATGGGAGATGCCAATGCCAGCATCCCTACTCCTGAACCG AAACTCATGCGACCAATGTTTGGAGCTCATGGAAAGGCGTGCAGTTCCCAG
genomic: CGTGGGCACAGATGGGAGATGCCAATGCCAGCATCCCTACTCCTGAACCGgtgcgttgcg ... ggttaagcagAAACTCATGCGACCAATGTTTGGAGCTCATGGAAAGGCGTGCAGTTCCCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGACATTTTGGAGCGAAGCCTGAGATGGTTCTCAAGTGTGGCTTTATCGCGTGGGCACAGATGGGAGATGCCAATGCCAGCATCCCTACTCCTGAACCGgtgcgttgcggttatgagacacttccaacttatctctgaacactagcttgctttcagcattagaatcgatttggtttatattttgaggctaataagcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG