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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGCAGATTCACCTAAAACTACTATCATCAAGGCCTTCTACAGTAACTTGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtctttgctcttatcagaaattggatgttgagatttaagtctcttatactttataccacttcctacgatttacttccacttgttcatgttctta...

Basic information

species Physcomitrella patens
transcript PP1S26_191V6.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S26_191V6.1 (Physcomitrella patens), 5'ss of exon 16
lower sequence: GLYMA18G18490.1 (Glycine max), 5'ss of exon 20
--ACCTGCAGATTCACCTAAAACTACTATCATCAAGGCCTTCTACAGTAACTTGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtctttgctcttatcagaaattggatgttgagatttaagtctcttatactttataccacttcctacgatttacttcca---cttgttca-tgttctta
   |||| | | || |   |||| || |  ||  |||||  ||  |  || ||| |   ||||   || ||||||||||| |||||||||||||| |||||||| ||  |  ||  | |  |    | |   |  ||   | ||     ||| | |  | ||   | |||    | |  || |  |    |||   | || | | |
CAGCCTGGAAACTCGC---AAACAACCAATATTCAGGCCACCTTTACAAATTTGACCATAAATGTATATACAGATTTTGTTTTTCAGGCAGCAGTCCCAAAGGt-atgctacttagtatgctgttgagtgacagctttctaattgtacttctaaga--tcatcataattcgggtgttaaacatataagttttgcctactgctttca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162191131|gb|FC367393.1|FC367393
EST:     TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAG                         TTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
genomic: TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtct ... tttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
EST: gi|37820996|gb|BJ579062.1|BJ579062
EST:     TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAG                         TTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
genomic: TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtct ... tttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
EST: gi|37852688|gb|BJ610696.1|BJ610696
EST:     TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAG                         TTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
genomic: TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtct ... tttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
EST: gi|162191132|gb|FC367394.1|FC367394
EST:     TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAG                         TTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
genomic: TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtct ... tttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
EST: gi|37822697|gb|BJ580763.1|BJ580763
EST:     TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAG                         TTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
genomic: TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtct ... tttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
EST: gi|162162150|gb|FC337724.1|FC337724
EST:     TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAG                         TTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
genomic: TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtct ... tttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT