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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATTGCCTCAAATGGAGAAACTGTGAAGTGGACTACTCCTCTTGGACTTCCCGTTGTGCAACCTTACCGCAAGCCTGGCAGACATTTGgtatgggcaggaaatatcttcattgtctcctttagttttgatgtctacaacattgcacggttcttggtgcatccatacagcatgtacttgaccgtatatg...

Basic information

species Physcomitrella patens
transcript PP1S256_41V6.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S256_41V6.1 (Physcomitrella patens), 5'ss of exon 16
lower sequence: GLYMA18G51160.1 (Glycine max), 5'ss of exon 15
ATCATTGCCTCAAATGGAGAAACTGTGAAGTGGACTACTCCTCTTGGACTTCCCGTTGTGCAACCTTACCGCAAGCCTGGCAGACATTTGgtatgggcag-gaaatatcttcattgtctcctttagt-tttgatgtctacaacattgcacggttcttggtgcatccatacagcatgtacttgaccgt-atatg-------
 | ||||| ||  |     || | |||   ||||| ||||||||||||||||| || |||||||||||||| || |  || |  ||| | ||  | |||  |  || | ||  |  |  | | |  | ||| | ||    |  ||| || ||   |   |   |  |||    ||     | |  || |||||       
GTAATTGCTTCTGAAAATCAACCAGTGCGCTGGACCACTCCTCTTGGACTTCCTGTGGTGCAACCTTACCGTAAACTAGGAAAGCATATTgtgagtgcaatgggatttttttttaattacatctcttctttcaagttcctaggatttcaaggcattctttaggttaatagtctattattattattgttatatggttgcag

upper sequence: PP1S256_41V6.1 (Physcomitrella patens), 5'ss of exon 16
lower sequence: Vv14s0083g00790.t01 (Vitis vinifera), 5'ss of exon 15
ATCATTGCCTCAAATGGAGAAACTGTGAAGTGGACTACTCCTCTTGGACTTCCCGTTGTGCAACCTTACCGCAAGCCTGGCAGACATTTGgtatgggcag---------gaaatatcttcattgt---ctcctttag---ttttgatgtctacaacattgcacggttcttggtgcatccatacagcatgtacttgaccgtatatg------
|| ||||| ||  |     |  ||||||  |||||||| || ||||||||||| || |||||||||||||||||    || || ||||||||  | | ||         |||| |    ||   |     || |||     ||| |||| || ||  |   || |  | | |    ||  |  |   | | |||      ||         
ATAATTGCATCGGAAAATCAGCCTGTGAGATGGACTACACCACTTGGACTTCCTGTAGTGCAACCTTACCGCAAATTAGGGAGGCATTTGgtgagtgtagtgatttgtagaaacacacacaaaataaataccattatatcctttaatgtttataaactcaaacaggccattgcatgtcattttactttcttctttgttaaattgagtgcag

upper sequence: PP1S256_41V6.1 (Physcomitrella patens), 5'ss of exon 16
lower sequence: Vv01s0010g00690.t01 (Vitis vinifera), 5'ss of exon 15
ATCATTGCCTCAAATGGAGAAACTGTGAAGTGGACTACTCCTCTTGGACTTCCCGTTGTGCAACCTTACCGCAAGCCTGGCAGACATTTGgtatgggcaggaaatatcttcattgtctcctttagttttgatgtctacaa--cattgcacggt-tcttggtgcatccatacagcatgtacttgaccgtatatg---
 | || || ||  |     |  | |||  ||||| ||||||| | |||||||| ||||||||||| ||||||||    || || ||| | |||  |     | | || |  |   |||     | |    || |||  |   |||   |     | |     ||  |||  |   |  |  || || ||||||   
GTGATAGCTTCTGAGAATCATCCAGTGCGGTGGAATACTCCTTTGGGACTTCCTGTTGTGCAACCCTACCGCAAATTAGGAAGGCATCTTgtaatgttcatagaaatatatagcatctaaaacattggcaatatctttattccatcatataccatttcaaaacaaacatttaatgttgatgtg-ccatatatgcag