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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCACCTGGGTCTCCTCAAATGACTGTGATTAAAGCCTGCTACAGTAACTTGTCATCAAATCTTCTCACAGATTTTGTCTTTCAAGCAGCAGTTCCAAAGgtcttaatttgaatcttttgctataagttgattcttgtttttattgttttcacttctttacttttgtttacaacgtcaattttctaaatctgattattat...

Basic information

species Physcomitrella patens
transcript PP1S211_68V6.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S211_68V6.1 (Physcomitrella patens), 5'ss of exon 16
lower sequence: GLYMA02G03800.1 (Glycine max), 5'ss of exon 15
ACCACCTGGGTCTCCTCAAATGACTGTGATTAAAGCCTGCTACAGTAACTTGTCATCAAATCTTCTCACAGATTTTGTCTTTCAAGCAGCAGTTCCAAAGgtcttaatttgaatcttttgctataagttgattcttgtttttattgttttcacttctttacttttgtttacaacgtcaattttctaaatctgattattat---
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ACAACCAGGAAACCCACAAACAACAGTTATCCAGGCTACTTTTATGAATTTGTCCTCCAATTCATATACAGATTTTGTTTTTCAAGCAGCAGTTCCTAAGgtatgccaatcagtatgttatta-agctttttgcatgcagtgctaagatcatcatcatta-ttgtaattataaagata-taatttgaatttactgcttttaac