1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ATGTTGCATAAACAATTGGCAGTAACCAAAGAAGTACTTTCGCAGCGATCGCCTGGCTCGGCCTCTATGgtaaggatgcttttctctcgcgaatgtgcggttcatgatcattgacgtcatgtgttaacttaaacagattcatttgaatggcttattggtggtgttttgtcttctagataaacagatgtttgaaaagcagtggcagatacctaaaacctaccgataatgacctaattttgtacttatattgttcag
species | Physcomitrella patens |
transcript | PP1S208_168V6.2 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CAGTAACCAAAGAAGTACTTTCGCAGCGATCGCCTGGCTCGGCCTCTATG ATCGACGCCTATGAGGAGTTTCATGGACTTTCATATATACTAGATAGGTGAEST: gi|37852404|gb|BJ610412.1|BJ610412
genomic: CAGTAACCAAAGAAGTACTTTCGCAGCGATCGCCTGGCTCGGCCTCTATGgtaaggatgc ... tattgttcagATCGACGCCTATGAGGAGTTTCATGGACTTTCATATATACTAGATAGGTGA
EST: CAGTAACCAAAGAAGTACTTTCGCAGCGATCGCCTGGCTCGGCCTCTATG ATCGACGCCTATGAGGAGTTTCATGGACTTTCATATATACTAGATAGGTGAEST: gi|37846810|gb|BJ604818.1|BJ604818
genomic: CAGTAACCAAAGAAGTACTTTCGCAGCGATCGCCTGGCTCGGCCTCTATGgtaaggatgc ... tattgttcagATCGACGCCTATGAGGAGTTTCATGGACTTTCATATATACTAGATAGGTGA
EST: CAGTAACCAAAGAAGTACTTTCGCAGCGATCGCCTGGCTCGGCCTCTATG ATCGACGCCTATGAGGAGTTTCATGGACTTTCATATATACTAGATAGGTGAEST: gi|208379263|gb|DC918949.1|DC918949
genomic: CAGTAACCAAAGAAGTACTTTCGCAGCGATCGCCTGGCTCGGCCTCTATGgtaaggatgc ... tattgttcagATCGACGCCTATGAGGAGTTTCATGGACTTTCATATATACTAGATAGGTGA
EST: CAGTAACCAAAGAAGTACTTTCGCAGCGATCGCCTGGCTCGGCCTCTATG ATCGACGCCTATGAGGAGTTTCATGGACTTTCATATATACTAGATAGGTGA
genomic: CAGTAACCAAAGAAGTACTTTCGCAGCGATCGCCTGGCTCGGCCTCTATGgtaaggatgc ... tattgttcagATCGACGCCTATGAGGAGTTTCATGGACTTTCATATATACTAGATAGGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTTGCATAAACAATTGGCAGTAACCAAAGAAGTACTTTCGCAGCGATCGCCTGGCTCGGCCTCTATGgtaaggatgcttttctctcgcgaatgtgcggttcatgatcattgacgtcatgtgttaacttaaacagattcatttgaatggcttattggtggtgttttgtcttctagataaacagatgtttgaaaagcagtggcagatacctaaaacctaccgataatgacctaattttgtacttatattgttcag
- - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - AGAAGT