1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GACTGGTTTGGACTTGGTCAAAGGAGTTGTTAGGAACAACATCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAGgtaagaaacatgtgcttttgaaagattcccttttaatatatgaagattttttgacagatatgtactgtctcgtttctggatcattgttctttgtatgttgaggttaattgctctggtgtgtgggggtgtaagatcatgcctgatgtgacatcggtattttttgcag
species | Physcomitrella patens |
transcript | PP1S200_112V6.2 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAG TTTGCAACTGAAGCTGCAATTACAATCCTACGAATTGATGACATGATCAAAEST: gi|37824347|gb|BJ582413.1|BJ582413
genomic: TCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAGgtaagaaaca ... ttttttgcagTTTGCAACTGAAGCTGCAATTACAATCCTACGAATTGATGACATGATCAAA
EST: TCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAG TTTGCAACTGAAGCTGCAATTACAATCCTACGAATTGATGACATGATCAAAEST: gi|162198732|gb|FC374839.1|FC374839
genomic: TCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAGgtaagaaaca ... ttttttgcagTTTGCAACTGAAGCTGCAATTACAATCCTACGAATTGATGACATGATCAAA
EST: TCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAG TTTGCAACTGAAGCTGCAATTACAATCCTACGAATTGATGACATGATCAAAEST: gi|67693120|gb|BJ953353.1|BJ953353
genomic: TCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAGgtaagaaaca ... ttttttgcagTTTGCAACTGAAGCTGCAATTACAATCCTACGAATTGATGACATGATCAAA
EST: TCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAG TTTGCAACTGAAGCTGCAATTACAATCCTACGAATTGATGACATGATCAAAEST: gi|162151582|gb|FC327295.1|FC327295
genomic: TCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAGgtaagaaaca ... ttttttgcagTTTGCAACTGAAGCTGCAATTACAATCCTACGAATTGATGACATGATCAAA
EST: TCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAG TTTGCAACTGAAGCTGCAATTACAATCCTACGAATTGATGACATGATCAAAEST: gi|37830674|gb|BJ588686.1|BJ588686
genomic: TCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAGgtaagaaaca ... ttttttgcagTTTGCAACTGAAGCTGCAATTACAATCCTACGAATTGATGACATGATCAAA
EST: TCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAG TTTGCAACTGAAGCTGCAATTACAATCCTACGAATTGATGACATGATCAAA
genomic: TCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAGgtaagaaaca ... ttttttgcagTTTGCAACTGAAGCTGCAATTACAATCCTACGAATTGATGACATGATCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTGGTTTGGACTTGGTCAAAGGAGTTGTTAGGAACAACATCGAAGCTGGTGTGCTTGAGCCAGCTATGAGTAAAATTAAAATCATTCAGgtaagaaacatgtgcttttgaaagattcccttttaatatatgaagattttttgacagatatgtactgtctcgtttctggatcattgttctttgtatgttgaggttaattgctctggtgtgtgggggtgtaagatcatgcctgatgtgacatcggtattttttgcag
- - - - - - - - - - - - - - - - - - - - - - AAGCTG