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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGGAGGGTTCTCGTGGACCAGCCGAAGCTGATGAATTAAATGCACGGGTGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccgaaaccttgttgctgtgaagtatactttctgaacttaatctggcatgataaaatgttgacttttgaggtcatacttgtgaatacttgttaa...

Basic information

species Physcomitrella patens
transcript PP1S192_39V6.4
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37850762|gb|BJ608770.1|BJ608770
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|37821380|gb|BJ579446.1|BJ579446
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|37842189|gb|BJ600197.1|BJ600197
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         G
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcag-
EST: gi|37842189|gb|BJ600197.1|BJ600197
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         G
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcag-
EST: gi|37842189|gb|BJ600197.1|BJ600197
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         G
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcag-
EST: gi|37842189|gb|BJ600197.1|BJ600197
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         G
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcag-
EST: gi|37842189|gb|BJ600197.1|BJ600197
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         G
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcag-
EST: gi|37851014|gb|BJ609022.1|BJ609022
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|37841660|gb|BJ599668.1|BJ599668
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|208381262|gb|DC919152.1|DC919152
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|162173094|gb|FC349200.1|FC349200
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         TAGGTAACAGCCGAATGTGAAGGATATGC
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGC
EST: gi|162218573|gb|FC394539.1|FC394539
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|37850441|gb|BJ608449.1|BJ608449
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|37843663|gb|BJ601671.1|BJ601671
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         G
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcag-
EST: gi|37843663|gb|BJ601671.1|BJ601671
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         G
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcag-
EST: gi|37843663|gb|BJ601671.1|BJ601671
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         G
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcag-
EST: gi|37843663|gb|BJ601671.1|BJ601671
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         G
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcag-
EST: gi|37843663|gb|BJ601671.1|BJ601671
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         G
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcag-
EST: gi|7584227|gb|AW700124.1|AW700124
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|162279045|gb|FC455072.1|FC455072
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|162227769|gb|FC402697.1|FC402697
EST:     TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: TGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccg ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAGGAGGGTTCTCGTGGACCAGCCGAAGCTGATGAATTAAATGCACGGGTGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGgcaggtaccgaaaccttgttgctgtgaagtatactttctgaacttaatctggcatgataaaatgttgacttttgaggtcatacttgtgaatacttgttaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA