1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TCTTGCGCACGCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGGgtatgcccagtcctgccatttgattttgaagttcttattttcgagtgatggtggtagtgcaggcaaacttacagcactggtacatttatttgatatatta...
species | Physcomitrella patens |
transcript | PP1S107_75V6.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGG GTATACAAATCCGATAATCAGACTTATTGGTCTGATTGTGTTTGCATCTGTEST: gi|162262917|gb|FC438777.1|FC438777
genomic: GCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGGgtatgcccag ... catttggcagGTATACAAATCCGATAATCAGACTTATTGGTCTGATTGTGTTTGCATCTGT
EST: GCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGG GTATACAAATCCGATAATCAGACTTATTGGTCTGATTGTGTTTGCATCTGTEST: gi|162262918|gb|FC438778.1|FC438778
genomic: GCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGGgtatgcccag ... catttggcagGTATACAAATCCGATAATCAGACTTATTGGTCTGATTGTGTTTGCATCTGT
EST: GCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGG GTATACAAATCCGATAATCAGACTTATTGGTCTGATTGTGTTTGCATCTGTEST: gi|162254694|gb|FC430983.1|FC430983
genomic: GCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGGgtatgcccag ... catttggcagGTATACAAATCCGATAATCAGACTTATTGGTCTGATTGTGTTTGCATCTGT
EST: GCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGG GTATACAAATCCGATAATCAGACTTATTGGTCTGATTGTGTTTGCATCTGTEST: gi|37847993|gb|BJ606001.1|BJ606001
genomic: GCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGGgtatgcccag ... catttggcagGTATACAAATCCGATAATCAGACTTATTGGTCTGATTGTGTTTGCATCTGT
EST: GCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGG GTATACAAATCCGATAATCAGACTTATTGGTCTGATTGTGTTTGCATCTGTEST: gi|162161441|gb|FC336815.1|FC336815
genomic: GCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGGgtatgcccag ... catttggcagGTATACAAATCCGATAATCAGACTTATTGGTCTGATTGTGTTTGCATCTGT
EST: GCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGG GTATACAAATCCGATAATCAGACTTATTGGTCTGATTGTGTTTGCATCTGT
genomic: GCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGGgtatgcccag ... catttggcagGTATACAAATCCGATAATCAGACTTATTGGTCTGATTGTGTTTGCATCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTGCGCACGCACAGCTTTCTGCAGTGTTTTACGACCGAGTTCTTATGTTCGCTTGGGGgtatgcccagtcctgccatttgattttgaagttcttattttcgagtgatggtggtagtgcaggcaaacttacagcactggtacatttatttgatatatta
- - - - - - - - - - CTGCAG