1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTGACTGTAACAGGCGCATCGGATGAAGCTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcataacacagtgggttacgctcttttacaaactgcagcgtgattgattatccgagacataaccatggacacgattacgctttaaacttgatac...
species | Physcomitrella patens |
transcript | PP1S90_220V6.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAG GCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACAEST: gi|162152238|gb|FC328217.1|FC328217
genomic: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcat ... gtctgtatagGCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACA
EST: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAG GCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACAEST: gi|208372841|gb|DC956242.1|DC956242
genomic: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcat ... gtctgtatagGCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACA
EST: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAG GCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACAEST: gi|18335990|gb|BJ168011.1|BJ168011
genomic: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcat ... gtctgtatagGCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACA
EST: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAG GCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACAEST: gi|162169774|gb|FC345311.1|FC345311
genomic: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcat ... gtctgtatagGCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACA
EST: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAG GCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACAEST: gi|162152239|gb|FC328218.1|FC328218
genomic: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcat ... gtctgtatagGCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACA
EST: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAG GCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACAEST: gi|67726457|gb|BJ976716.1|BJ976716
genomic: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcat ... gtctgtatagGCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACA
EST: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAG GCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACAEST: gi|67695993|gb|BJ956226.1|BJ956226
genomic: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcat ... gtctgtatagGCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACA
EST: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAG GCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACAEST: gi|162186917|gb|FC362595.1|FC362595
genomic: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcat ... gtctgtatagGCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACA
EST: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAG GCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACAEST: gi|162169775|gb|FC345312.1|FC345312
genomic: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcat ... gtctgtatagGCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACA
EST: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAG GCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACAEST: gi|162154000|gb|FC330235.1|FC330235
genomic: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcat ... gtctgtatagGCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACA
EST: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAG GCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACAEST: gi|162169382|gb|FC345738.1|FC345738
genomic: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcat ... gtctgtatagGCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACA
EST: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAG GCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACA
genomic: CTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcat ... gtctgtatagGCTGCAATATATGGGCGAGACCCCAACTGGGGCCGCATAGCCTGTGCCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACTGTAACAGGCGCATCGGATGAAGCTGCAGCCGCAACGGTGGCTCGCTCTGTTGCCGCCTCCTCCTTAACGAAGgtgagttcataacacagtgggttacgctcttttacaaactgcagcgtgattgattatccgagacataaccatggacacgattacgctttaaacttgatac
- - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC