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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTTTCTCAATACAACGAAATAATTATACAGAAGCGTCAAGAGGAAGCTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgccatagtcaggttcattctttgtgaaaaaattaaaattgaatcgccgttctgaggcgcaatttgtatgttccacaactgttctcgtaacaag...

Basic information

species Physcomitrella patens
transcript PP1S81_165V6.3
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37822626|gb|BJ580692.1|BJ580692
EST:     CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG                         AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: gi|37822648|gb|BJ580714.1|BJ580714
EST:     CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG                         AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: gi|162155141|gb|FC330935.1|FC330935
EST:     CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG                         AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: gi|37824049|gb|BJ582115.1|BJ582115
EST:     CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG                         AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: gi|162155140|gb|FC330934.1|FC330934
EST:     CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG                         AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: gi|37851125|gb|BJ609133.1|BJ609133
EST:     CAAACGGCACCACCACAATG                         AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
genomic: CAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: gi|162199150|gb|FC374596.1|FC374596
EST:     CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG                         AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: gi|37839286|gb|BJ597294.1|BJ597294
EST:     CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGG                         AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAAC
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAAT-Ggtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAAC
EST: gi|162256335|gb|FC432345.1|FC432345
EST:     CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG                         AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC