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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTCACTTATGGAGGCTTACTCCCTCAGTGTTCAGCATGAGCAAACTACCTTACAGATTTTGCAAACTAAACTTGGATCTGATGACCTTCGAACACAGgttcatccgctttcctttagtgtgatacatagtgtatgtgtttttcgtcatttaacacatgaaaatagaagtttgaattattttttatcactactgtttatgagaataatgaaatatcacggtgagttctgtcagtaagattttgtgtcatccattagtccgtttttttgaacttgtcgtttgtgctgatcacacag

Basic information

species Physcomitrella patens
transcript PP1S73_28V6.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S73_28V6.1 (Physcomitrella patens), 5'ss of exon 15
lower sequence: EFJ26734 (Selaginella moellendorffii), 5'ss of exon 20
GCTTTCACTTATGGAGGCTTACTCCCTCAGTGTTCAGCATGAGCAAACTACCTTACAGATTTTGCAAACTAAACTTGGATCTGATGACCTTCGAACACAGgttcatccgctttcctttagtgtgatacatagtgt-atgtgtttttcgtcatttaacacatgaaaatagaagtttgaattattttttatcactactgtttatgagaataatgaaatatcacggtgagttctgtcagtaagattttgtgtcatccattagtccgtttttttgaacttgtcgtttgtgctgatcacacag
 ||||| || ||||| || |||||||||||||| ||||| |||||||| ||  | || || |||||| |||| |||||  |||||||| | || |||||||| | |    | |     |||| | ||  |  |   || |||| ||  || ||| |   ||| |                                                                                                                                      
CCTTTCGCTAATGGAAGCGTACTCCCTCAGTGTACAGCACGAGCAAACAACGCTTCAAATCTTGCAAGCTAAGCTTGGTCCTGATGACTTGCGCACACAGgtac-taacttatttgcgagtgcgctattttattcgatttgttctttttcttttcat-tatgtag-------------------------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S73_28V6.1 (Physcomitrella patens), 5'ss of exon 15
lower sequence: EFJ26424 (Selaginella moellendorffii), 5'ss of exon 20
GCTTTCACTTATGGAGGCTTACTCCCTCAGTGTTCAGCATGAGCAAACTACCTTACAGATTTTGCAAACTAAACTTGGATCTGATGACCTTCGAACACAGgttcatccgctttcctttagtgtgatacatagtgt-atgtgtttttcgtcatttaacacatgaaaatagaagtttgaattattttttatcactactgtttatgagaataatgaaatatcacggtgagttctgtcagtaagattttgtgtcatccattagtccgtttttttgaacttgtcgtttgtgctgatcacacag
 ||||| || ||||| || |||||||||||||| ||||| |||||||| ||  | || || |||||| |||| |||||  |||||||| | || |||||||| | |    | |     ||||   ||  |  |   || |||| ||  || || |  |  |                                                                                                                                         
CCTTTCGCTAATGGAAGCGTACTCCCTCAGTGTACAGCACGAGCAAACAACGCTTCAAATCTTGCAAGCTAAGCTTGGTCCTGATGACTTGCGCACACAGgtac-taacttatttgcgagtgcactattttattcgatttgttctttttctttcattatgtag---------------------------------------------------------------------------------------------------------------------------------------