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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCAGGCTGGTGGTGACAAGCTTGTGACAGTGGAAGAGATTGTCACTGAACACTGGAACACTTATGGTCGTCATTATTATACACGTTACGACTATGAGgttagattttctctatttctaattgttgagttcattatttgacttttaccgaaatgattgacaagtaatttccaccttcgaatttgctctgatttaccactcttgggcacggacag

Basic information

species Physcomitrella patens
transcript PP1S4_12V6.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S4_12V6.3 (Physcomitrella patens), 5'ss of exon 15
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 14
CAAGCAGGCT-GGTGGTGACAAGCTTGTGACAGTGGAAGAGATTGTCACTGAACACTGGAACACTTATGGTCGTCATTATTATACACGTTACGACTATGAGgttagattttctctatttctaattgttgagttcattatttg-----acttttaccgaaatgattgacaagtaatttccaccttc--gaatttgctctgatttaccactcttgggcacggacag
    ||  || || || || |||||||| || || ||||| |||||     | ||||||   ||||||||||| |||||||||||||| || |||||||||||    ||| | | | |  | | |||  | ||   | | ||     || |||  | | ||| |   || |  ||||    ||||  |||                                  
-GGACAACCTTGGAGGCGATAAGCTTGTTACTGTTGAAGATATTGTTCGCCAGCACTGGGGTACTTATGGTCGCCATTATTATACACGATATGACTATGAGgt--actttacacaaatattcaatgtacatttatgtgtatgtatatacatttggcaacatgctaaccatgccatttttttcttcctgaag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100406742|gb|BY955714.1|BY955714
EST:     AACACTGGAACACTTATGGTCGTCATTATTATACACGTTACGACTATGAG                         AATGTGGACTCCGATGATGCAAAGAAACTCATGGCTCATNCT-GTTGATCT
genomic: AACACTGGAACACTTATGGTCGTCATTATTATACACGTTACGACTATGAGgttagatttt ... gcacggacagAATGTGGACTCCGATGATGCAAAGAAACTCATGGCTCAT-CTTGTTGATCT