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CAAGGAGAAATTTGTATTCGTGGAAAGACACTGTTTTCTGGATATTATAAACGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAGgtacgccttgtaccatctaaaggtgattactccggctcattgctctaatgtcacttcatctgcagattcccggttgaattgatgaattgatgtttacctt...
species | Physcomitrella patens |
transcript | PP1S47_161V6.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ATCAATGGTTGGTTTCACACAG GCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCAEST: gi|162196991|gb|FC375216.1|FC375216
genomic: ATCAATGGTTGGTTTCACACAGgtacgccttg ... tgtgtatcagGCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCA
EST: ACGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAG GCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCAEST: gi|6102274|gb|AW126744.1|AW126744
genomic: ACGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAGgtacgccttg ... tgtgtatcagGCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCA
EST: ACGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAG GCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCAEST: gi|162167248|gb|FC342813.1|FC342813
genomic: ACGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAGgtacgccttg ... tgtgtatcagGCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCA
EST: ACGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAG GCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCAEST: gi|162194188|gb|FC371039.1|FC371039
genomic: ACGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAGgtacgccttg ... tgtgtatcagGCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCA
EST: ACGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAG GCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCAEST: gi|162177647|gb|FC353233.1|FC353233
genomic: ACGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAGgtacgccttg ... tgtgtatcagGCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCA
EST: CACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAG GCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCAEST: gi|162177648|gb|FC353234.1|FC353234
genomic: CACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAGgtacgccttg ... tgtgtatcagGCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCA
EST: ACGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAG GCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCAEST: gi|67692540|gb|BJ952773.1|BJ952773
genomic: ACGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAGgtacgccttg ... tgtgtatcagGCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCA
EST: NCGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAG GCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCA
genomic: ACGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAGgtacgccttg ... tgtgtatcagGCGATATTGGAGAGTGGCAAAAAGATGGTGCTTTGAAGATTATTGATCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGAGAAATTTGTATTCGTGGAAAGACACTGTTTTCTGGATATTATAAACGACCGGAGCTCACGGAGGAGGTTCTTATCAATGGTTGGTTTCACACAGgtacgccttgtaccatctaaaggtgattactccggctcattgctctaatgtcacttcatctgcagattcccggttgaattgatgaattgatgtttacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG