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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTCTCTTCCACACGGTGTCAATAACACTGCAATTAGTGTCCATGATGATGAACCAACAAGCATCATTGCATATGCGCTTCTCACCCCAAAATACCATgtaagtgaatgtagtgcaatgtactaccattccgtactagctgctgattgcttcagtgcttatcgtaccacattgtttatccttgcagctatgtcctgtaatttcaaatgtagtcctttcataaatgtttatcaaatttcctacattgaataagttggaatcacttttccttattgcag

Basic information

species Physcomitrella patens
transcript PP1S36_196V6.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162214944|gb|FC390504.1|FC390504
EST:     ATGAACCAACAAGCATCATTGCATATGCGCTTCTCACCCCAAAATACCAT                         GCAGAGCTTGGAGAAGCGGTTGCAGAGAATGACAAAGAAAAACCCAAAGAA
genomic: ATGAACCAACAAGCATCATTGCATATGCGCTTCTCACCCCAAAATACCATgtaagtgaat ... cttattgcagGCAGAGCTTGGAGAAGCGGTTGCAGAGAATGACAAAGAAAAACCCAAAGAA
EST: gi|100442405|gb|BY981429.1|BY981429
EST:     ATGAACCAACAAGCATCATTGCATATGCGCTTCTCACCCCAAAATACCAT                         GCAGAGCTTGGAGAAGCGGTTGCAGAGAATGACAAAGAAAAACCCAAAGAA
genomic: ATGAACCAACAAGCATCATTGCATATGCGCTTCTCACCCCAAAATACCATgtaagtgaat ... cttattgcagGCAGAGCTTGGAGAAGCGGTTGCAGAGAATGACAAAGAAAAACCCAAAGAA
EST: gi|100441960|gb|BY981183.1|BY981183
EST:     ATGAACCAACAAGCATCATTGCATATGCGCTTCTCACCCCAAAATACCAT                         GCAGAGCTTGGAGAAGCGGTTGCAGAGAATGACAAAGAAAAACCCAAAGAA
genomic: ATGAACCAACAAGCATCATTGCATATGCGCTTCTCACCCCAAAATACCATgtaagtgaat ... cttattgcagGCAGAGCTTGGAGAAGCGGTTGCAGAGAATGACAAAGAAAAACCCAAAGAA