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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGATAAATTTGGGCCCCTTACTTTATCACTTTGCCgctgaaacaacttactctccagaagaggcaagttcttctgtctcaaattttacgactgataattgggaatgctggtcgattttcttagagcaatggatga...

Basic information

species Physcomitrella patens
transcript PP1S249_29V6.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S249_29V6.1 (Physcomitrella patens), 5'ss of exon 15
lower sequence: GLYMA20G16030.1 (Glycine max), 5'ss of exon 15
GTTTGGATAAATTTGGGCCCCTTACTTTATCACTTTGCCgctgaaacaacttactctccagaagaggcaag---ttcttctgtctcaaattttacgactgataattgggaatgctggt-cgatttt-cttagagcaatggatga---------
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GTTTGGATAAATTTGGGACCTCTACTTTATCACTTTGCAGAT------ATGTATGGACAGGATGATgtatgactccttttcttttcacatactatatcacatcacttgtttggtgggtactatcttactctggagtctggactttgtctgtag

upper sequence: PP1S249_29V6.1 (Physcomitrella patens), 5'ss of exon 15
lower sequence: GLYMA13G10730.1 (Glycine max), 5'ss of exon 17
GTTTGGATAAATTTGGGCCCCTTACTTTATCACTTTGCCgctgaaacaacttactctccagaagaggcaag---ttcttctgtctcaaattttacgactgataattgggaatgctggt-cgatttt-cttagagcaatggatga--
||||||||||||||||| ||  |||||||||||||||| | |      |  ||    |  || || | | |      ||   | ||| ||  ||   |  || |   |    |  ||| | || || ||  |  || ||  ||   
GTTTGGATAAATTTGGGACCTCTACTTTATCACTTTGCAGAT------ATGTATGGACAGGATGATgtatgactccttttcttttcacatactatatcacatcacatgtttggtgggtactatcttactctggtcattgtctgtag