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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgccttggacttcttagatagtttctatttatacagcaatttccgatctccacctaattgagtagaatttgatttatcactccactgttcctac...

Basic information

species Physcomitrella patens
transcript PP1S222_130V6.2
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7067204|gb|AW497059.1|AW497059
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162220369|gb|FC395737.1|FC395737
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162153066|gb|FC330096.1|FC330096
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCANGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGGAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGG-AAA
EST: gi|162208214|gb|FC384318.1|FC384318
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|15730173|gb|BI741714.1|BI741714
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GCTGCATGGGAGATATTTACACCATTGTTGCATCGGATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162211596|gb|FC387676.1|FC387676
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|18339482|gb|BJ171509.1|BJ171509
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|37823531|gb|BJ581597.1|BJ581597
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|67698044|gb|BJ958277.1|BJ958277
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162153065|gb|FC330095.1|FC330095
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162259274|gb|FC435671.1|FC435671
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162243422|gb|FC425118.1|FC425118
EST:     GGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: GGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|37827352|gb|BJ585364.1|BJ585364
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|37844665|gb|BJ602673.1|BJ602673
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162259275|gb|FC435672.1|FC435672
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162276852|gb|FC452534.1|FC452534
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|37829780|gb|BJ587792.1|BJ587792
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|37851060|gb|BJ609068.1|BJ609068
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|67694438|gb|BJ954671.1|BJ954671
EST:     TNTTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162243423|gb|FC425119.1|FC425119
EST:     GGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: GGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|67578605|gb|BJ950772.1|BJ950772
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA