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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGTTCTCGTGGACCAGCCGAAGCTGATGAATTAAATGCACGGGTGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaaccttgttgctgtgaagtatactttctgaacttaatctggcatgataaaatgttgacttttgaggtcatacttgtgaatacttgttaacatc...

Basic information

species Physcomitrella patens
transcript PP1S192_39V6.5
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162173094|gb|FC349200.1|FC349200
EST:     ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG----                         TAGGTAACAGCCGAATGTGAAGGATATGC
genomic: ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaac ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGC
EST: gi|162218573|gb|FC394539.1|FC394539
EST:     ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATT----GCAG                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaac ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|162279045|gb|FC455072.1|FC455072
EST:     ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG----                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaac ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|37842189|gb|BJ600197.1|BJ600197
EST:     ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAG                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaac ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|37841660|gb|BJ599668.1|BJ599668
EST:     ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG----                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaac ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|37843663|gb|BJ601671.1|BJ601671
EST:     ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAG                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaac ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|37850762|gb|BJ608770.1|BJ608770
EST:     ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG----                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaac ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|208381262|gb|DC919152.1|DC919152
EST:     ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG----                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaac ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|7584227|gb|AW700124.1|AW700124
EST:     ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG----                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaac ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|37821380|gb|BJ579446.1|BJ579446
EST:     ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG----                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaac ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|37851014|gb|BJ609022.1|BJ609022
EST:     ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG----                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaac ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|162227769|gb|FC402697.1|FC402697
EST:     ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG----                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaac ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
EST: gi|37850441|gb|BJ608449.1|BJ608449
EST:     ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAG----                         TAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG
genomic: ATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaac ... cattgtgcagTAGGTAACAGCCGAATGTGAAGGATATGCAAAAATCGGAAGAAAGGGATAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGGTTCTCGTGGACCAGCCGAAGCTGATGAATTAAATGCACGGGTGGGATATAGGCGGACTGAGGGTTATTGCTGGAAACCACCTACATTGCAGGCAGgtaccgaaaccttgttgctgtgaagtatactttctgaacttaatctggcatgataaaatgttgacttttgaggtcatacttgtgaatacttgttaacatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA