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GTGGATCCCAGCACAGGTGATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAGgtgggcttatttttggatagctggtgtcggatttttcgtcatttacgtgcatggaacttgatttcttgattatagatttgagtggaagaatcgcacggtg...
species | Physcomitrella patens |
transcript | PP1S15_298V6.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAG ATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAATEST: gi|162150206|gb|FC326291.1|FC326291
genomic: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAGgtgggcttat ... catgtacaagATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAAT
EST: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAG ATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAATEST: gi|37853045|gb|BJ611053.1|BJ611053
genomic: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAGgtgggcttat ... catgtacaagATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAAT
EST: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAG ATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAATEST: gi|162270703|gb|FC446316.1|FC446316
genomic: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAGgtgggcttat ... catgtacaagATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAAT
EST: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAG ATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAATEST: gi|37839057|gb|BJ597065.1|BJ597065
genomic: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAGgtgggcttat ... catgtacaagATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAAT
EST: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTNGGAG ATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAATEST: gi|37840740|gb|BJ598748.1|BJ598748
genomic: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAGgtgggcttat ... catgtacaagATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAAT
EST: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTNGAAGATTNGGAG ATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAATEST: gi|162161341|gb|FC336767.1|FC336767
genomic: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAGgtgggcttat ... catgtacaagATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAAT
EST: AGATGAATATCAACTTGAAGATTTGGAG ATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAATEST: gi|162151628|gb|FC327757.1|FC327757
genomic: AGATGAATATCAACTTGAAGATTTGGAGgtgggcttat ... catgtacaagATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAAT
EST: AAGATTTGGAG ATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAATEST: gi|162151226|gb|FC327186.1|FC327186
genomic: AAGATTTGGAGgtgggcttat ... catgtacaagATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAAT
EST: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAG ATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAATEST: gi|37842472|gb|BJ600480.1|BJ600480
genomic: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAGgtgggcttat ... catgtacaagATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAAT
EST: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAG ATTACTGCAGCAGATTACATTNTGAAGGCAGGAGTGTCCAACTTCAGAAAT
genomic: ATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAGgtgggcttat ... catgtacaagATTACTGCAGCAGATTACATTCTGAAGGCAGGAGTGTCCAACTTCAGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGATCCCAGCACAGGTGATGCTGACGAAGATGGATACGAAGATGAATATCAACTTGAAGATTTGGAGgtgggcttatttttggatagctggtgtcggatttttcgtcatttacgtgcatggaacttgatttcttgattatagatttgagtggaagaatcgcacggtg
- - - - - - - - - ATGCTG
- - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG