1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CAGCAAGCAGTCCTATATGCGTGGTAAAAGGATTCTGGAAATCAACCCCAAGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttcaccagatttccattgttgtctaacccgaaattacagattcaactgtggaaggtgcccatgattcactgtcaatgttcaagacattgttcgcatttactaacttctatgccagacagcctttttacactagtactttttattgttttgcag
species | Physcomitrella patens |
transcript | PP1S126_38V6.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|162166690|gb|FC342659.1|FC342659
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|37838652|gb|BJ596660.1|BJ596660
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|18341140|gb|BJ173173.1|BJ173173
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGNAGAAAATATCCTTGAGTTNTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|162240202|gb|FC418329.1|FC418329
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|37843903|gb|BJ601911.1|BJ601911
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|37836149|gb|BJ594157.1|BJ594157
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|18332522|gb|BJ164535.1|BJ164535
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: GCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|37826825|gb|BJ584837.1|BJ584837
genomic: GCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|37825141|gb|BJ583207.1|BJ583207
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|37826145|gb|BJ584157.1|BJ584157
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|162260418|gb|FC435044.1|FC435044
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|162240201|gb|FC418328.1|FC418328
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|162168869|gb|FC345343.1|FC345343
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|37841177|gb|BJ599185.1|BJ599185
genomic: AAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|37834239|gb|BJ592251.1|BJ592251
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|37831437|gb|BJ589449.1|BJ589449
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|37843052|gb|BJ601060.1|BJ601060
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|67727873|gb|BJ978132.1|BJ978132
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|162196000|gb|FC372691.1|FC372691
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|37847752|gb|BJ605760.1|BJ605760
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|18334981|gb|BJ166999.1|BJ166999
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|37826629|gb|BJ584641.1|BJ584641
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: CCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTAEST: gi|37824151|gb|BJ582217.1|BJ582217
genomic: CCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
EST: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAG GATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
genomic: AGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttc ... tgttttgcagGATGATTCAGCGAAACAGGCAGCCAAGCTTGTATTCGAGACGGCTTTGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCAAGCAGTCCTATATGCGTGGTAAAAGGATTCTGGAAATCAACCCCAAGCACCCAATTATCAAAGATTTGAAGGAGAAAATATCCTTGAGTTCTGAGgtgagttttcaccagatttccattgttgtctaacccgaaattacagattcaactgtggaaggtgcccatgattcactgtcaatgttcaagacattgttcgcatttactaacttctatgccagacagcctttttacactagtactttttattgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA