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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTTGCTTGCTCATAGCGCCATCCATGGAGCTATGGCAGGGTATTGCGGTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCAgtaagatctttaataacacatactatctgctgggtcagttaaatagtttttgtgataaatttctgattcatgtagacgcgttagacattattcacaggca...

Basic information

species Physcomitrella patens
transcript PP1S81_165V6.3
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37822626|gb|BJ580692.1|BJ580692
EST:     GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCA                         CGAGTGGTGGCGAAGTCGCGACACGTAAACATAGCTGATCGCATGTGGGCG
genomic: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCAgtaagatctt ... gttttgacagCGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
EST: gi|37822648|gb|BJ580714.1|BJ580714
EST:     GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCA                         CGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
genomic: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCAgtaagatctt ... gttttgacagCGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
EST: gi|162199150|gb|FC374596.1|FC374596
EST:     GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCA                         CGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
genomic: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCAgtaagatctt ... gttttgacagCGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
EST: gi|37839286|gb|BJ597294.1|BJ597294
EST:     GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCA                         CGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
genomic: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCAgtaagatctt ... gttttgacagCGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
EST: gi|162256335|gb|FC432345.1|FC432345
EST:     GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCA                         CGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
genomic: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCAgtaagatctt ... gttttgacagCGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG