1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TTGAGGGAATCCAAGAACCTTTCAACTATTAAGTTCCGACCACACACTGGAGAGgtaagaacaaaatggcttgcttgaatttgtgtcaatgcgatggtattttcagaaagcatgctatttgtccatgtaaattactgtgaaattttgtttgaggtacgcacatcaaacattggaaatttagttgttggatggactggatactgatgtgattgtttcag
species | Physcomitrella patens |
transcript | PP1S77_89V6.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GGGAATCCAAGAACCTTTCAACTATTAAGTTCCGACCACACACTGGAGAG GCTGGTGATTTGGACCATTTAGCAGCATCCTTCTTGGTGGCACACAATATTEST: gi|19779903|gb|BQ039488.1|BQ039488
genomic: GGGAATCCAAGAACCTTTCAACTATTAAGTTCCGACCACACACTGGAGAGgtaagaacaa ... attgtttcagGCTGGTGATTTGGACCATTTAGCAGCATCCTTCTTGGTGGCACACAATATT
EST: GGAATCCAAGAACCTTTCAACTATTAAGTTCCGACCACACACTGGAGAG GCTGGTGATTTGGACCATTTAGCAGCATCCTTCTTGGTGGCACACAATATTEST: gi|162268981|gb|FC445473.1|FC445473
genomic: GGAATCCAAGAACCTTTCAACTATTAAGTTCCGACCACACACTGGAGAGgtaagaacaa ... attgtttcagGCTGGTGATTTGGACCATTTAGCAGCATCCTTCTTGGTGGCACACAATATT
EST: GGGAATCCAAGAACCTTTCAACTATTAAGTTCCGACCACACACTGGAGAG GCTGGTGATTTGGACCATTTAGCAGCATCCTTCTTGGTGGCACACAATATT
genomic: GGGAATCCAAGAACCTTTCAACTATTAAGTTCCGACCACACACTGGAGAGgtaagaacaa ... attgtttcagGCTGGTGATTTGGACCATTTAGCAGCATCCTTCTTGGTGGCACACAATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAGGGAATCCAAGAACCTTTCAACTATTAAGTTCCGACCACACACTGGAGAGgtaagaacaaaatggcttgcttgaatttgtgtcaatgcgatggtattttcagaaagcatgctatttgtccatgtaaattactgtgaaattttgtttgaggtacgcacatcaaacattggaaatttagttgttggatggactggatactgatgtgattgtttcag
- - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - TGGAGA