Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCTTGATACCCAGCCATTGATTCGGTCTGTATTGGATGGATTCAATGTATGCATCTTTGCCTACGGTCAAACAGGATCTGGAAAGACCTACACCATGgtaatcttctcttttcttgtctttcttttcctttctactttttaatttaattttatgatacacttttttatggctttacaactttttaacttttttcttg...

Basic information

species Physcomitrella patens
transcript PP1S68_75V6.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S68_75V6.1 (Physcomitrella patens), 5'ss of exon 14
lower sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
TTTCCTTGATACCCAGCCATTGATTCGGTCTGTATTGGATGGATTCAATGTATGCATCTTTGCCTACGGTCAAACAGGATCTGGAAAGACCTACACCATGgtaatcttctcttttcttgtctttcttttcctttctactttttaatttaattttatgatacacttttttatggctttacaactttttaacttttttcttg
 ||||| ||||| ||||||||||| ||||| ||  | ||||| | ||| || || || ||||| || ||||||||||| || ||||| || |||||||||||| |  |  | | |  |         ||  || | ||| |||  | ||                                                   
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacattatttgcaactatttgctgtacag------------------------------------------------

upper sequence: PP1S68_75V6.1 (Physcomitrella patens), 5'ss of exon 14
lower sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
TTTCCTTGATACCCAGCCATTGATTCGGTCTGTATTGGATGGATTCAATGTATGCATCTTTGCCTACGGTCAAACAGGATCTGGAAAGACCTACACCATGgtaatcttctcttttct-tgtctttcttttcctttctactttttaatttaattttatgatacacttttttatggctttacaactttttaacttttttcttg
 ||||| ||||| ||||||||||| ||||| ||  | ||||| | ||| || || || ||||| || ||||||||||| || ||||| || |||||||||||| |  |  | |   | |         ||  || | ||| |||  | ||                                                   
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacataattatacaacaacattatttgcaactatttgctgtacag------------------------------------------------