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GGTCGGCTAATTCTTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACGgtacgtcgccgttcttaaacctaaatcgcatagtccaacatcacgtatttgtcatgctgtcttgttcactaggagatactggctaatatcaagagaaagc...
species | Physcomitrella patens |
transcript | PP1S68_234V6.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACG GCTTTATTGTACCTGCCTTTTGCGATTAGCAATGCTTTATCAGCGACGTTCEST: gi|37827814|gb|BJ585826.1|BJ585826
genomic: TTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACGgtacgtcgcc ... gttgaaacagGCTTTATTGTACCTGCCTTTTGCGATTAGCAATGCTTTATCAGCGACGTTC
EST: TTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACG GCTTTATTGTACCTGCCTTTTGCGATTAGCAATGCTTTATCAGCGACGTTCEST: gi|208395924|gb|DC920346.1|DC920346
genomic: TTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACGgtacgtcgcc ... gttgaaacagGCTTTATTGTACCTGCCTTTTGCGATTAGCAATGCTTTATCAGCGACGTTC
EST: TTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACG GCTTTATTGTACCTGCCTTTTGCGATTAGCAATGCTTTATCAGCGACGTTCEST: gi|208389101|gb|DC945677.1|DC945677
genomic: TTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACGgtacgtcgcc ... gttgaaacagGCTTTATTGTACCTGCCTTTTGCGATTAGCAATGCTTTATCAGCGACGTTC
EST: TTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACG GCTTTATTGTACCTGCCTTTTGCGATTAGCAATGCTTTATCAGCGACGTTCEST: gi|67700196|gb|BJ960429.1|BJ960429
genomic: TTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACGgtacgtcgcc ... gttgaaacagGCTTTATTGTACCTGCCTTTTGCGATTAGCAATGCTTTATCAGCGACGTTC
EST: TTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACG GCTTTATTGTACCTGCCTTTTGCGATTAGCAATGCTTTATCAGCGACGTTCEST: gi|208378180|gb|DC918801.1|DC918801
genomic: TTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACGgtacgtcgcc ... gttgaaacagGCTTTATTGTACCTGCCTTTTGCGATTAGCAATGCTTTATCAGCGACGTTC
EST: TTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACG GCTTTATTGTACCTGCCTTTTGCGATTAGCAATGCTTTATCAGCGACGTTC
genomic: TTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACGgtacgtcgcc ... gttgaaacagGCTTTATTGTACCTGCCTTTTGCGATTAGCAATGCTTTATCAGCGACGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCGGCTAATTCTTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACGgtacgtcgccgttcttaaacctaaatcgcatagtccaacatcacgtatttgtcatgctgtcttgttcactaggagatactggctaatatcaagagaaagc
- - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaaa