1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TATAGTGCGAAGCAGTACACCAGACGAGGGAGGCTCAATCCCAGGAACTCCAAAAATTAATCTAGAAGCTCGAGAAGATAGTGCAACAAATCTTGCCGAGgtttttgattaatcttctttggttccgagcaattctatattaacatgaaggagtcttacaatctcgatgttattatcttcatctgaggggtggtccacat...
species | Physcomitrella patens |
transcript | PP1S59_173V6.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CAAAAATTAATCTAGAAGCTCGAGAAGATAGTGCAACAAATCTTGCCGAG GCCAAAGCTGCCCTTNCA-GCTGGAATGAGGAAAGGAGGTCCAAAAAGTCCEST: gi|100369515|gb|BY948129.1|BY948129
genomic: CAAAAATTAATCTAGAAGCTCGAGAAGATAGTGCAACAAATCTTGCCGAGgtttttgatt ... tttccttcagGCCAAAGCTGCCCTT-CAAGCTGGAATGAGGAAAGGAGGTCCAAAAGGTCC
EST: CAAAAATTAATCTAGAAGCTCGAGAAGATAGTGCAACAAATCTTGCCGAG GCCAAAGCTGCCCTTCAAGCTGGAATGAGGAAAGGAGGTCCAAAAGGTCCTEST: gi|162266710|gb|FC442863.1|FC442863
genomic: CAAAAATTAATCTAGAAGCTCGAGAAGATAGTGCAACAAATCTTGCCGAGgtttttgatt ... tttccttcagGCCAAAGCTGCCCTTCAAGCTGGAATGAGGAAAGGAGGTCCAAAAGGTCCT
EST: CAAAAATTAATCTAGAAGCTCGAGAAGATAGTGCAACAAATCTTGCCGAG GCCAAAGCTGCCCTTCAAGCTGGAATGAGGAAAGGAGGTCCAAAAGGTCCT
genomic: CAAAAATTAATCTAGAAGCTCGAGAAGATAGTGCAACAAATCTTGCCGAGgtttttgatt ... tttccttcagGCCAAAGCTGCCCTTCAAGCTGGAATGAGGAAAGGAGGTCCAAAAGGTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATAGTGCGAAGCAGTACACCAGACGAGGGAGGCTCAATCCCAGGAACTCCAAAAATTAATCTAGAAGCTCGAGAAGATAGTGCAACAAATCTTGCCGAGgtttttgattaatcttctttggttccgagcaattctatattaacatgaaggagtcttacaatctcgatgttattatcttcatctgaggggtggtccacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC