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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGTATGGCAGTCTTTAGTCAGCATCATGTTGATGGCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCTgtgagaaacgtttcctttttcaatcatggactctgttctcattagtttaatatctatgcttaaagggttatagatttgaatatttaaccagtttcgttct...

Basic information

species Physcomitrella patens
transcript PP1S47_97V6.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S47_97V6.1 (Physcomitrella patens), 5'ss of exon 14
lower sequence: EFJ22634 (Selaginella moellendorffii), 5'ss of exon 14
GTTCGTATGGCAGTCTTTAGTCAGCATCATGTTGATGGCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCTgtgagaaacgtttcctttttcaatcatggactctgttctcattagtttaatatctatgcttaaagggttatagatttgaatatttaaccagtttcgttct
|| || ||||| || ||||||||||| ||||| || ||| | || || |||||||||||||| ||||||||| |||  |||||||||||   ||  ||  |   |     || ||   | |||| ||| |   | |   |  ||   || ||                                   
GTGCGCATGGCTGTTTTTAGTCAGCACCATGTAGACGGCCTTGACCTTTCATCAACGCCTCTCCTCTACATGTCACGTTGTTTCCCTgt---aagtgtccctgctactcgtcttgcg-tgtgttatcagtttatgaccgttcattggtacag-----------------------------------

upper sequence: PP1S47_97V6.1 (Physcomitrella patens), 5'ss of exon 14
lower sequence: EFJ11792 (Selaginella moellendorffii), 5'ss of exon 14
GTTCGTATGGCAGTCTTTAGTCAGCATCATGTTGATGGCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCTgtgagaaacgtttcctttttcaatcatggactctgttctcattagtttaatatctatgcttaaagggttatagatttgaatatttaaccagtttcgttct
|| || ||||| || ||||||||||| ||||| || ||| | || || || ||||||||||| ||||||||| |||  |||||||||||   ||  ||  |   |     || ||     |||| ||| |   | |   |  ||   || ||                                   
GTGCGCATGGCTGTTTTTAGTCAGCACCATGTAGACGGCCTTGACCTTTCGTCAACGCCTCTCCTCTACATGTCACGTTGTTTCCCTgt---aagtgtcactgctactcgtcttgcg---tgttatcagtttatgaccgttcattggtacag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19789030|gb|BQ041056.1|BQ041056
EST:     GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCT                         GGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
genomic: GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCTgtgagaaacg ... gttgtttcagGGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
EST: gi|162199129|gb|FC375821.1|FC375821
EST:     GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCT                         GGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
genomic: GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCTgtgagaaacg ... gttgtttcagGGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
EST: gi|18341144|gb|BJ173177.1|BJ173177
EST:     GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCT                         AGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
genomic: GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCTgtgagaaacg ... gttgtttcagGGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
EST: gi|18337417|gb|BJ169441.1|BJ169441
EST:     ACATGGCACACTGTTTCCCT                         AGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
genomic: ACATGGCACACTGTTTCCCTgtgagaaacg ... gttgtttcagGGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
EST: gi|37828058|gb|BJ586070.1|BJ586070
EST:     GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCT                         GGTGTATTGGAGCAATGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
genomic: GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCTgtgagaaacg ... gttgtttcagGGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
EST: gi|162187556|gb|FC363818.1|FC363818
EST:     GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCT                         GGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
genomic: GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCTgtgagaaacg ... gttgtttcagGGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
EST: gi|37836283|gb|BJ594291.1|BJ594291
EST:     GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCT                         GGTGTATTGGAGCAATGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
genomic: GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCTgtgagaaacg ... gttgtttcagGGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
EST: gi|162174579|gb|FC350234.1|FC350234
EST:     GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCT                         GGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG
genomic: GCTTGGATCTCTCATCAACGCCTCTTCTCTACATGGCACACTGTTTCCCTgtgagaaacg ... gttgtttcagGGTGTATTGGAGCAACGTCTGCGTGCCCACCTAGGTTCATTTGGAATCACG