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AAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAAgtaagttttaattgccctttactatcatggtttttgtgatgtgctttgacttcataggcacgaaggtctggaaattatgctacataaaattctcacagtt...
species | Physcomitrella patens |
transcript | PP1S47_196V6.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAA CCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACATEST: gi|162202250|gb|FC377586.1|FC377586
genomic: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAAgtaagtttta ... tttctcgcagCCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACAT
EST: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAA CCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACATEST: gi|162202249|gb|FC377585.1|FC377585
genomic: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAAgtaagtttta ... tttctcgcagCCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACAT
EST: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAA CCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACATEST: gi|208347797|gb|DC921124.1|DC921124
genomic: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAAgtaagtttta ... tttctcgcagCCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACAT
EST: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAA CCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACATEST: gi|37833862|gb|BJ591874.1|BJ591874
genomic: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAAgtaagtttta ... tttctcgcagCCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACAT
EST: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAA CCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACATEST: gi|18333154|gb|BJ165168.1|BJ165168
genomic: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAAgtaagtttta ... tttctcgcagCCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACAT
EST: CTGCGCTCAAACAATAATATTGTAACTCTAGCTCAA CCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACATEST: gi|162177458|gb|FC353719.1|FC353719
genomic: CTGCGCTCAAACAATAATATTGTAACTCTAGCTCAAgtaagtttta ... tttctcgcagCCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACAT
EST: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAA CCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACATEST: gi|18333973|gb|BJ165989.1|BJ165989
genomic: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAAgtaagtttta ... tttctcgcagCCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACAT
EST: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAA CCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACAT
genomic: GTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAAgtaagtttta ... tttctcgcagCCTTTACACCAGAAAGTTCCTTCTTTCTTTGGAAAAGATAAAGTTATACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAAgtaagttttaattgccctttactatcatggtttttgtgatgtgctttgacttcataggcacgaaggtctggaaattatgctacataaaattctcacagtt
- - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA