1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTAGTTGTGCAATGTTCTCTAAGCAAGAAATTGACGAAATTATCCAGATCGGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatcgcacgtgtgttcattgtaaagcttcaacagattgatttgtgtggtatcgttttgcatgatgcattcttccattatcaatgtcgatagaatcctaatgtatccacttattgtcctgcag
species | Physcomitrella patens |
transcript | PP1S46_63V6.4 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGEST: gi|37845395|gb|BJ603403.1|BJ603403
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGEST: gi|37844504|gb|BJ602512.1|BJ602512
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGEST: gi|37821565|gb|BJ579631.1|BJ579631
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTNCCGGCACCCATGEST: gi|37845475|gb|BJ603483.1|BJ603483
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGEST: gi|15728667|gb|BI740908.1|BI740908
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGEST: gi|67698315|gb|BJ958548.1|BJ958548
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGEST: gi|67699841|gb|BJ960074.1|BJ960074
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGEST: gi|37853174|gb|BJ611182.1|BJ611182
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGEST: gi|37843382|gb|BJ601390.1|BJ601390
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGEST: gi|37844166|gb|BJ602174.1|BJ602174
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGEST: gi|162161851|gb|FC338252.1|FC338252
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGEST: gi|37849779|gb|BJ607787.1|BJ607787
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGEST: gi|18337003|gb|BJ169026.1|BJ169026
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTCATCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGEST: gi|37826730|gb|BJ584742.1|BJ584742
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAGTTGTGCAATGTTCTCTAAGCAAGAAATTGACGAAATTATCCAGATCGGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatcgcacgtgtgttcattgtaaagcttcaacagattgatttgtgtggtatcgttttgcatgatgcattcttccattatcaatgtcgatagaatcctaatgtatccacttattgtcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC