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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGTTGTGCAATGTTCTCTAAGCAAGAAATTGACGAAATTATCCAGATCGGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatcgcacgtgtgttcattgtaaagcttcaacagattgatttgtgtggtatcgttttgcatgatgcattcttccattatcaatgtcgatagaatcctaatgtatccacttattgtcctgcag

Basic information

species Physcomitrella patens
transcript PP1S46_63V6.2
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37852739|gb|BJ610747.1|BJ610747
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|37845395|gb|BJ603403.1|BJ603403
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|37844504|gb|BJ602512.1|BJ602512
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|37821565|gb|BJ579631.1|BJ579631
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTNCCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|37845475|gb|BJ603483.1|BJ603483
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|15728667|gb|BI740908.1|BI740908
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|67698315|gb|BJ958548.1|BJ958548
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|67699841|gb|BJ960074.1|BJ960074
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|37853174|gb|BJ611182.1|BJ611182
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|37843382|gb|BJ601390.1|BJ601390
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|37844166|gb|BJ602174.1|BJ602174
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|162161851|gb|FC338252.1|FC338252
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|37849779|gb|BJ607787.1|BJ607787
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|18337003|gb|BJ169026.1|BJ169026
EST:     GGTTACCTTAATGGGCTTTTTGTTTCATCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
EST: gi|37826730|gb|BJ584742.1|BJ584742
EST:     GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGG                         ACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG
genomic: GGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatc ... tgtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTAGTTGTGCAATGTTCTCTAAGCAAGAAATTGACGAAATTATCCAGATCGGTTACCTTAATGGGCTTTTTGTTTTAGCAAGAAGCATCGGCTTGATTGGgtacgtgatcgcacgtgtgttcattgtaaagcttcaacagattgatttgtgtggtatcgttttgcatgatgcattcttccattatcaatgtcgatagaatcctaatgtatccacttattgtcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC