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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGGTATCTCAAATGGACAACCAAAGCTGTTACTGTCCATTATTCAGGACTATCCATTGCTCAACTTCATGTTGACATCTGCCATCTATATCTTGgtaagcatttgccaagctagtttgatatttgagatgttatttgattaagtaatcctagaactttttggtgtgtaattgtttagtatctaatattttggttactctttggctttag

Basic information

species Physcomitrella patens
transcript PP1S357_34V6.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S357_34V6.1 (Physcomitrella patens), 5'ss of exon 14
lower sequence: Vv00s0650g00030.t01 (Vitis vinifera), 5'ss of exon 1
---GACTGGTATCTCAAATGGACAACCAAAGCTGTTACTGTCCATTATTCAGGACTATCCATTGCTCAACTTCATGTTGACATCTGCCATCTATATCTTGgtaagcatttgccaagctagtttgatatttgagatgttatttgattaagtaatcctag-aactttttggtgtgtaattgtttagtatctaatattttggttactctttggctttag
     |    |   | |||||||| || |||  | | || ||  ||||||  || ||| |  |||||||||||||| | ||| |||||||||||||||| |||||||  |       |   |||||  || | || ||||   | | |  ||| |||   | | |    | | || ||| || || | |    | |  |                 
CAGATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTCTTATTCCAGATTATTCGCTGCTCAACTTCATGCTCACAACTGCCATCTATATCTTAgtaagcagattt-----ttccttgatgcttcaaattttat--aagtgaaaaatactaatgaatctcccctttttatttgctt-gtgt-tgtcctctctgcag--------------

upper sequence: PP1S357_34V6.1 (Physcomitrella patens), 5'ss of exon 14
lower sequence: Vv07s0005g05580.t01 (Vitis vinifera), 5'ss of exon 1
---GACTGGTATCTCAAATGGACAACCAAAGCTGTTACTGTCCATTATTCAGGACTATCCATTGCTCAACTTCATGTTGACATCTGCCATCTATATCTTGgtaagcatttgccaagctagtttgatatttgagatgttatttgattaagtaatcctagaactttttggtgtgtaattgtttagtatctaatattttggttactctttggctttag
     |    |   | |||||||| || |||  | | || ||  ||||||  || ||| |  |||||||||||||| | ||| |||||||||||||||| |||||||  |       |   |||||  || | || ||||   | | |  ||| |||     | |   | | | |||   | || | |    | |  |                 
CAGATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTCTTATTCCAGATTATTCGCTGCTCAACTTCATGCTCACAACTGCCATCTATATCTTAgtaagcagattt-----ttccttgatgcttcaaattttat--aagtgaaaaatactaatgaatctcccttttttatttgcttgtgt-tgtcctctctgcag--------------

upper sequence: PP1S357_34V6.1 (Physcomitrella patens), 5'ss of exon 14
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 9
GACTGGTATCTCAAATGGACAACCAAAGCTGTTACTGTCCATTATTCAGGACTATCCATTGCTCAACTTCATGTTGACATCTGCCATCTATATCTTGgtaagcatttgccaagctagtttgatatttgagatgttatttgattaagtaatcctag-aactttttggtgtgtaattgtttagtatctaatattttggttactctttggctttag
  |    |   | |||||||| || |||  | | || ||  ||||||  || ||||| ||||||||||||||| | ||  |||||||||||||||| |||||||  |       |   |||||  || | || |||    | | |  ||| |||   | | | |  | | || ||| || || | |    | |  |                 
ATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTTTTATTCCAGATTATCCGTTGCTCAACTTCATGCTCACGACTGCCATCTATATCTTAgtaagcagattt-----ttccttgatgcttcaaattttac--aagtgaaaaatactaatgaatctctcttttttacttgctt-gtgt-tgtcctctctgcag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37822242|gb|BJ580308.1|BJ580308
EST:     AGGACTATCCATTGCTCAACTTCATGTTGACATCTGCCATCTATATCTTG                         GTATCTTACCGGTTTTTTGAGTTGACGAATCGCTTGAAAAATGCTTTTGTC
genomic: AGGACTATCCATTGCTCAACTTCATGTTGACATCTGCCATCTATATCTTGgtaagcattt ... ttggctttagGTATCTTACCGGTTTTTTGAGTTGACGAATCGCTTGAAAAATGCTTTTGTC
EST: gi|208368050|gb|DC955429.1|DC955429
EST:     AGGACTATCCATTGCTCAACTTCATGTTGACATCTGCCATCTATATCTTG                         GTATCTTACCGGTTTTTTGAGTTGACGAATCGCTTGAAAAATGCTTTTGTC
genomic: AGGACTATCCATTGCTCAACTTCATGTTGACATCTGCCATCTATATCTTGgtaagcattt ... ttggctttagGTATCTTACCGGTTTTTTGAGTTGACGAATCGCTTGAAAAATGCTTTTGTC